RNA id: XM_021595531.2


Basic Information

Item Value
RNA id XM_021595531.2
length 1358
RNA type mRNA
GC content 0.45
exon number 8
gene id mrps15
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29458530 ~ 29463042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCATCCTTCTCATTTCCTGAATTGACTTCTCCGTCTGATTGGTTATGTCTAATCAAAATGGCGATCCTCATGTGAGGGACGAATGCTGtttactcgttacattttgaccaTTAATACCGGACATATATCAAATCATCTCTGAATCAGCCATGTTATCAAGCATGGCTTTAAGAAGTGCTTTTAAATcgacatctgtcgttctgcgaGAATGTGGTGTTTTATCCAGACTGAAAGGAACCTGTGCGTCTCTCCGATTGAGACATGGGGCATTCACCTCTGTCACCACAGGGCCTTCACACAGCAACAATGAGACTGCATTGACagGTATTGGGAGTTTCACCATTCAGTCTGTGAGAAACTATGCCCGTGTCGTAAGAAAGAAGAAGCCAGTGATGAAAAGTCAGTTGAGTGATCTTCCTCCGACAATGCTGAAAATGGAATATGCCGCTGTTCCACTCGCTCAAACAGCTGATGACCTTGTCAAAAGACTTCTGACACTGGAACTAGCAAGCCATAGCGAGAAGTTGAAATTGAAAACGGAGCAGCTGATTGCAAAAGTCCAGAGGGATGAAGCTGACCGCAGCTCTACAGAAGTCAAGGTGGCCATTTTGACCTCCAAAATCCGAAACTACCAGGAGCACCTGCACAAACATACAAAGGACAAAGCGAACAAGCGATGGATGCTCATGGCCATTGACCGCAGGAAGAAGCTGCTCAAGCACCTCAGGGTAACGCGCTACGACGCCTTTGAACATGTCTGCCAGCAGCTGGGCATCACCTACACTTTCCCTCCGGAGTACTACAGACATGCCACCCGACGCTGGCTGGCCAAGAAGGCCCTGTGCATAAAGGTCTTCAAAGAGGTGCAGAAACAGAAACTGGAGCAAAGGAAGAAAATTAAGCAGACCCCTCCCCCCACGTTGGCAGAACCAGCCAGGACAGCAGCTACAGGAACCCAATAAACTGCTACAGTATCCAATGTCTGTCTTATGCATTCAGTCTTGCTCTCAATGGACAAATTAGTTTTGCATGGCCCAGTGAGCGGGGTTTGCTCCTTTTCGACCATTCCATTTGTCCTAAGGAGAAATCTCCACCCACCCATGCCACCAGTTCATGTAAAATTAATTTTCCCATGTATTGTTATACTGTAATAAGAAACATGAATAACTTATTGTTTGTAGTACACCAAGTCTTCATTCTTCTTGTCCCTTCTGCAAGTAGATGCATCATCAAATAAATGCAGTGACGCAGATATGTGGTTTTGGTGTGGGCAATGTCTATGTGCTCCACATATGTGACCTGAGAGTGTCAAATAAACCCACAATGAATCATTTAATAAAATGTATTGTATAATCCA

Function

GO:      GO:0030529

KEGG:

id description
K02956 RP-S15, MRPS15, rpsO; small subunit ribosomal protein S15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278068 lncRNA downstream 45546 29412197 ~ 29412984 (-) True stk40
TU277878 lncRNA downstream 67687 29390588 ~ 29390843 (-) True G243330
TU277870 lncRNA downstream 71835 29381626 ~ 29386695 (-) True G243322
TU277857 lncRNA downstream 90086 29367987 ~ 29368444 (-) True G243309
TU277798 lncRNA downstream 172062 29283851 ~ 29286468 (-) True G243257
TU278139 lncRNA upstream 65349 29528391 ~ 29528626 (-) True G243568
TU278252 lncRNA upstream 203621 29666663 ~ 29666899 (-) True G243678
TU278516 lncRNA upstream 283739 29746781 ~ 29748615 (-) True G243928
TU278662 lncRNA upstream 484891 29947933 ~ 29948274 (-) True G244069
TU278684 lncRNA upstream 508710 29971752 ~ 29972079 (-) True G244091
XM_021595535.2 mRNA downstream 140 29456450 ~ 29458390 (-) False LOC110517486
XM_021595536.2 mRNA downstream 402 29456450 ~ 29458128 (-) False LOC110517486
XM_021595520.2 mRNA downstream 2206 29447019 ~ 29456324 (-) True oscp1b
XM_021595514.2 mRNA downstream 15398 29412188 ~ 29443132 (-) False stk40
XM_036973784.1 mRNA downstream 69948 29322031 ~ 29388582 (-) True LOC110517416
XM_021581424.2 mRNA upstream 13214 29476256 ~ 29483747 (-) False csf3r
NM_001124402.1 mRNA upstream 13284 29476326 ~ 29487422 (-) False csf3r
XM_021581433.2 mRNA upstream 13457 29476499 ~ 29487439 (-) False csf3r
XM_021581429.2 mRNA upstream 13457 29476499 ~ 29487478 (-) True csf3r
XM_021595537.2 mRNA upstream 32223 29495265 ~ 29496880 (-) True LOC110517512
TU278065 other downstream 484 29456481 ~ 29458046 (-) True LOC110517486
TU277694 other downstream 305901 29132316 ~ 29152629 (-) True G243154
TU277309 other downstream 512238 28945741 ~ 28946292 (-) True G242796
TU277105 other downstream 672252 28781600 ~ 28786278 (-) False LOC110517244
TU277045 other downstream 728155 28726970 ~ 28730375 (-) True G242539
TU278954 other upstream 625801 30088843 ~ 30129214 (-) True G244338
TU278995 other upstream 710971 30174013 ~ 30177408 (-) True G244379
TU278997 other upstream 736190 30199232 ~ 30199770 (-) True G244381
TU279011 other upstream 748528 30211570 ~ 30217589 (-) False G244393
TU279014 other upstream 748528 30211570 ~ 30217112 (-) False G244393

Expression Profile