RNA id: XM_021595537.2


Basic Information

Item Value
RNA id XM_021595537.2
length 1443
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110517512
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 29495265 ~ 29496880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAACCAGCTGTCCATAATTAGTTCATCAAGACAGGCAGAGTTGAGGCTAGAGTGGCTGCATGTCAAGAGGTCGTAAGGTGCTTGAATCATTTGGTCATCAGGTAGTTTGGGTCCATACCACTGAAACAATGCATCGAGCTCTGCCAATATATCTAAGttttcttttgattggCTCTGTCTTTGCTGGAGGTTCCTGGTGTGCCAACACGGCAAGAGCCCGAGCAGCTGCCCTGGGTTTGGTCCTCCCTAGGACCCAGTTTGTCCCTTACAGCCTTCGACCAACACGCCATAGGAGTTTTGATCCCATAAAAACCCACTATGAAAATAATGATGGGCCCAAAGAGGCTGAGTTTGAGCCTATCCTTCTGCGCAACAGTAAAATCCAAGGGGATGGCTATCCAACTGACTGGGCCTATGGACAAGTCTTCGCCAGAGGCTTTCAACCCAAACCGTATTCACTAAACTATTACGGTTCTGATCCCAGTTTGGCTGACTCCTCTGTCAGCCATTCTGTCTACACTCCCAAGGGAGAACTTGTTAGCAGCTACAAGCCCAACTTTGAGCAAGTTAAGAATTCTGCGCCTCGATCAAATGTAATGGTAGCCCCTGGTCAGTTTGAGTTCTCAGACAAAGTGAACATTCGCGATTACTATAAGCCTGTTGTAGTTCAGCCTGTCCCCAGCAGACGTAGAACAACCCAGAGTGTGGTTCCACGACCCCAGAGCAGAGGTGCTGTACCTTATGGAAAAAGTATCTTATGGTCCTGGCCACAGTAGAGATTTATCCTCTCCACCATCCCAGAGTGGACTCATCAGCCTccgagctaaaaaaaaaaaaaaaatgatgttccCAGACCCTGGTGTTGTCCATTCTGTGATCAAAGAGCCAAAAATGAAGTGTCTGGAAAAAAAACGGATCCTGTTGGTTAAGATCCGAATGGACAAACTTTCCTTTGCAAACCACCTTTGGCTCCTCAGACATACATACCAGTGGTGAGCAAATCAGTGACCTTGTGCACTTTTAAGGGCAAAACATGTAAGCTGTGTTTGAAGTCATTACATTTACTTATCCATGACATGACTGTTCTGAATCACTATTTGTTTTTGGCTCTTCCCCCACTGCCCAGTGTTTATCCTTCAAATAAAATGTCTGTTTTTGAGattgtgttttttaaatttattacTAGACAAATCAACTGCCAGACCAAGTAAAGATTAACAATATGCTACATTTATAGAATTTTGGTTTAAGACCAGTTATCCAGTAGCGACTCACCAGAAGTGTATTTTAAAAGATACACTTTGAACTGAAATGTCATTTTGATAAATTGTTCAGTTTGCTTTTGACCTACAACTTTTAATCACCTCTTGTGATTATGTCCCTGTAAACCAATTTGATAGAAACTCAACTAGAGGTTGTCTCCAAATAAATGTGACAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278068 lncRNA downstream 82281 29412197 ~ 29412984 (-) True stk40
TU277878 lncRNA downstream 104422 29390588 ~ 29390843 (-) True G243330
TU277870 lncRNA downstream 108570 29381626 ~ 29386695 (-) True G243322
TU277857 lncRNA downstream 126821 29367987 ~ 29368444 (-) True G243309
TU277798 lncRNA downstream 208797 29283851 ~ 29286468 (-) True G243257
TU278139 lncRNA upstream 31511 29528391 ~ 29528626 (-) True G243568
TU278252 lncRNA upstream 169783 29666663 ~ 29666899 (-) True G243678
TU278516 lncRNA upstream 249901 29746781 ~ 29748615 (-) True G243928
TU278662 lncRNA upstream 451053 29947933 ~ 29948274 (-) True G244069
TU278684 lncRNA upstream 474872 29971752 ~ 29972079 (-) True G244091
XM_021581429.2 mRNA downstream 7787 29476499 ~ 29487478 (-) True csf3r
XM_021581433.2 mRNA downstream 7826 29476499 ~ 29487439 (-) False csf3r
NM_001124402.1 mRNA downstream 7843 29476326 ~ 29487422 (-) False csf3r
XM_021581424.2 mRNA downstream 11518 29476256 ~ 29483747 (-) False csf3r
XM_021595531.2 mRNA downstream 32223 29458530 ~ 29463042 (-) True mrps15
XM_021595539.2 mRNA upstream 282195 29779075 ~ 29901161 (-) True LOC110517528
XM_021595555.2 mRNA upstream 632373 30129253 ~ 30138701 (-) False LOC110517552
XM_021595551.2 mRNA upstream 632373 30129253 ~ 30138702 (-) False LOC110517552
XM_036973792.1 mRNA upstream 632373 30129253 ~ 30138703 (-) True LOC110517552
XM_021595595.2 mRNA upstream 726381 30223261 ~ 30249900 (-) True LOC110517624
TU278065 other downstream 37219 29456481 ~ 29458046 (-) True LOC110517486
TU277694 other downstream 342636 29132316 ~ 29152629 (-) True G243154
TU277309 other downstream 548973 28945741 ~ 28946292 (-) True G242796
TU277105 other downstream 708987 28781600 ~ 28786278 (-) False LOC110517244
TU277045 other downstream 764890 28726970 ~ 28730375 (-) True G242539
TU278954 other upstream 591963 30088843 ~ 30129214 (-) True G244338
TU278995 other upstream 677133 30174013 ~ 30177408 (-) True G244379
TU278997 other upstream 702352 30199232 ~ 30199770 (-) True G244381
TU279011 other upstream 714690 30211570 ~ 30217589 (-) False G244393
TU279014 other upstream 714690 30211570 ~ 30217112 (-) False G244393

Expression Profile