RNA id: XM_036973791.1


Basic Information

Item Value
RNA id XM_036973791.1
length 3605
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110517541
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30095176 ~ 30122574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCCTGGGTGGGGCTTATAGATGGGTAGGCCTTGTGGTGTTATTCTGAATGGTCaactagctagcaacaatgacaagaggCTATCATGTGTCATGGTcgttgtatggaggagaccatggcgcagcgtgGCAACAGTATCAACATGAAAAATAGGTCATAACCCTCCCATGCTGTACAAGAAAGCCCAGACAGTAATAAAGCATGGACCAGGCCTTTCCCAGCCTCCAGACCCCAGCCACTGGTCAATTTGAACCCAACACAggagagctccagctcagggtgGACTTCTTCAGAAAGTTGGGCTACTCCCCCATGGAGGTTCGGTCCGCCCTGCTTAAGCTAGGCCTGAGTACAGACACCAACTCTGTACTGGGGGAGCTGGTCCGCAGTGGAGCCAGCACTAGTACTTCTAACTCAACCATCCCTGAGAGTGGTGACGATACTACTGGCCCCACAAGCCACACAGGCTCCAGCATGGCCTCCTCTAGGACCCATGGCCCCAAGAGAGACAGACCAGTCCCATTACTGGAAGACAGGCGGGACACAGACAGTGAACTGAAACCTATCGTTATTGACGGCAGCAATGTGGCCATGAGTCATGGTAACAAACAAGTGTTCTCCTGTAGGGGAATTGAGTTGGCAGTGATCTATTTCCTGGATAGAGGTCACTCAACGGTCATTGTGTTTGTGCCCTCATGGCGCAAGGAGCAGCCCAGGCCTGATGTCCCCATCACAGACCAACACATTCTAATGGAGCTAGAGAAGAAGAAGATAGTCGTCTTCACTCCCTCGAGACGTGTCGGTGGTAAACGGGTGGTCTGCTACGACGACCGTTTTATTGTGAAGCATGCCTACGAGTCGGACGGCGTGATCGTGTCCAACGACACCTATAGGGACCTGCAGGGAGAGCGTCCGGAGTGGAAGCGTTGTATCGAGGAGAGGCTGCTTATGTACTCTTTCGTCAATGACAAATTCATGCCCCCAGATGACCCGCTTGGTCGTCATGGTCCCAGTCTGGAGAACTTCCTTCGGAAGAAGCCTCTGCTGCCAGAACACAAGCGCCAACTCTGTCCTTATGGTAAAAAGTGCACCTACGGCGTGAAGTGTAAGTTCTACCACCCTGAGCGCACTCACCAATCCCACTCCTCGTTGGCTGACGAGCTCAGGGAGAAGGCAAGGCTCTCCTCGGAAAAAGAGGACCGGAATCCCATGATGTcacacctgaggggcccccagGCCGACCCGGGATCCTTTCCCTCCTACTCTCTGGAGAATGACCTGGAGCACAGGTTGACGTTAGAGCACCGCGGTTCCCTGAGGGAGGGTCCCAAGAGCCAGGTAACTGAGAACATGTTGCTATACTGGGATGGGCCACGCTCCAGTAGGAACCAGCAGGCCCGCAGCCCCACAGCAGTAGGCCAAGGACAGATGGATTGGCCCAGTATGCTCTCCCCCTCCACTACTACTGACCTCCCCTATGCCAGCATCTCCCATGAGTGCCTGGACTCTGGTTTTGGCTCCTATGAGAGCCAGAGCCAGTACTCGGATGTGTCCCAAGGCCACAGCAAGGCCTTCAGGCCCAGGCAGCAGCAGGGCTTCccctctggttccagacatccaGGCATACATCCAGAGAGGCTGGCCCAGGACAGCCCCCAGCCCTGCAGGTGTTTCCATTTGGCTCCCTCCTCAGGTCCCCAGCAGCAGCACCACAGCAACCCACACCTCGAGTCCCACTCCCAATCCCAGCTGAGGTATGACACCTACTCGCCTCCTCTGTACCCACCCAACATGCACCACTACAGCCTCCCCTGCAACTTCCAGCAAGACGGGGTGGGGGCACACCATTTCCACCCCCATCAGCACCCCCAGAAGTACTGGTCAGACCCCTTCCATGGCGGGGTCCCCCAGGCTAGGGCATCCTGTAGCCTCCCCCCCGGCCCCCACCCTACCCCGCATGGAGCCCCCCACTCATGCTCCTCTTACAGGAATCAGCAGGAACACGACTCCTGGGCCCAGCCACCTCCACCTTCTGCCTttgactcagagagagaggagctccgTAAGAAACTGCAGGCCATTTTCAACCCCCACCAGGTGGATACGGTCATGGAGATGTTCCCTCACCTGATGGACGCCCAGAAGCTGGCTGCAGAGATCCTCAACCTCAAATCTCAGAGAGGTGCCTTCTGATGCCTCTAAGAATCTTGTCTAAGGGGTTGATTCAGGGTTGAGATAAGCTTGCACAACTCTTAACTTCCACGTAAATCAttcattgatgtcaatgggataCTTGGGTGAAAATGTGCCTTGGGTAATTCTCTTGCGCTTTTCCTTTAATTTACTCTAACGGTTTGAACTGTTTTGAATGTGAAAGGGCAAcattttgttgttgatgttgtccTTCCTTCGCGATCATGTGCTTGCATAGCTTATGTGAAATCCATGACAGGTAGTGTGTTCACAGTTTGGGAGAATCGGCATGAATCCCCTGTCGTGTTTAACTGGATAATTTGAGATTTTGACTTATTGAAGTTGTATACATTTATAACAGTGTAGTCAAATCTTGCCTTTAGACTCAGTACCATGGCAAAAGTGAATCTAGAGCGTTTGACTGTTGATGCATATTGTATCATCATTTGGGATATACGGTATGTGATCTCTCGTTTGTCCGAAATTCAGCTCTCATGCAATAAGAAATAATTGTCTAAAATAATGTCCTTGTCTAAAATGTCACCTTTTTACTGTTTTTGTTTATATTGTGGTTCTGATGGCCATAATGTATTTCCTGTCTCATAGACAAATATTCAGATTTCcatctctttatgcagtgtggaATGCAATGGTATACCTTTTTCCGTGTATAAAGCTACACCCAAAGAGCCCCAAACACTATACAGTATCCTTTTAAGCAAGATTATATGTGGAAGAAGCTGCCAAAGAACTGAATGAATGTTTTAGAAGCACTTTGTCATTGATCCAAATGTTCTAATTCCCTCATAGACCAGAATGTGACTTTTTCAGCAAATATGTGTACTGTAATATGGCTTGTGAGGGTCTCTTGTATCACCAAAGACTGGGTAAATCCAAAAGAtcttttaaagtaactgtccagtgtttcccgatttctatgaaatatgacctcaAATTAATTACAATACAGTATGAGTGAAATGGTTTTCCTTCCAAAATGTTTTAAGTAGGTTAAAAAGCAGcctttctgtgttggaatggtgtgagCGTATATCGTTTTTAAATTGTTGTATATTCATGCGAATAGACTGCTGATTGGCTATCTCAAGCTCCTGAGGAGGATGACAACATCCTCTGAGGAAATATTTTCTAAAATGCTTGCTGTTTGTTTGAGTTTAAGGGTATTTTTTTAATGGtttctccaatttatgctttggccacataCGAGTATAATATGAGTCatcaacattatttgggtatgagttaacagaatattaacttttttttaaagtgagATTTCCACTGAACAATTACTTTAACAATGTTTCTATGTTAGTTGTTGGCTATCCACTTTATAGATTTGTAAGTGCCTAAACATGTCAAATGTATAATTAAATTATCATGGACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278836 lncRNA upstream 22057 30072875 ~ 30073119 (+) True G244239
TU278828 lncRNA upstream 28722 30066243 ~ 30066454 (+) True G244231
TU278817 lncRNA upstream 35523 30059438 ~ 30059653 (+) True G244220
TU278815 lncRNA upstream 36550 30058419 ~ 30058626 (+) True G244218
TU278810 lncRNA upstream 37171 30057448 ~ 30058005 (+) False G244216
TU278890 lncRNA downstream 7023 30129597 ~ 30129834 (+) True G244289
TU278892 lncRNA downstream 9225 30131799 ~ 30132007 (+) True G244291
TU278894 lncRNA downstream 15116 30137690 ~ 30138188 (+) True G244293
TU278895 lncRNA downstream 15760 30138334 ~ 30138653 (+) True G244294
TU278856 lncRNA downstream 89378 30211952 ~ 30217683 (+) True LOC110517613
XM_036973780.1 mRNA upstream 783146 29290920 ~ 29312030 (+) True LOC110517404
XM_021595463.2 mRNA upstream 808699 29256338 ~ 29286477 (+) False thrap3a
XM_021595459.2 mRNA upstream 808699 29256339 ~ 29286477 (+) False thrap3a
XM_021595466.2 mRNA upstream 808699 29273132 ~ 29286477 (+) False thrap3a
XM_021595470.2 mRNA upstream 808699 29273147 ~ 29286477 (+) True thrap3a
XM_021595560.2 mRNA downstream 19949 30142523 ~ 30165671 (+) True LOC110517569
XM_021595572.2 mRNA downstream 48185 30170759 ~ 30196394 (+) False LOC110517587
XM_021595578.2 mRNA downstream 51454 30174028 ~ 30196394 (+) False LOC110517587
XM_021595584.2 mRNA downstream 53298 30175872 ~ 30196394 (+) True LOC110517587
XM_021595590.2 mRNA downstream 74021 30196595 ~ 30217693 (+) False LOC110517613
TU278253 other upstream 404380 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1060462 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2345450 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 2371382 27715043 ~ 27723794 (+) True LOC110516984
TU275557 other upstream 2536644 27556172 ~ 27558532 (+) True G241150
TU278893 other downstream 9825 30132399 ~ 30137564 (+) True G244292
TU279342 other downstream 509196 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 742992 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 795457 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 822164 30944738 ~ 30944862 (+) False LOC110518266

Expression Profile