RNA id: XM_021595584.2


Basic Information

Item Value
RNA id XM_021595584.2
length 2859
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110517587
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30170759 ~ 30196394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGTGGTTGATTAGTTTGGTCTGTGGCACGACTTCACTTGCGCGAGTGCGcgtgaaaaaaaatgtattctcaaCATTCCTTGCACGAACAGGTCCTTGGACATTGCACTGCACATAATGCGTGGAAGCCCTACTTGGAGATGTCTAGGGCGATTAAAGACACTGGGAACTCATTGAACGCAGTAAGCAGATCCCCAGTAGAAGGGAACAAGAGGGTGAACAGTGGAGTGGAGCACCCCAGAGTGGAGTCCGGCCCAGAGAGCCAAGGGAAAGTGAAGCGGGAGGGCTGGGATGAGCTGAAGCGCGAGGGCAGAGATGACCTGGTACGCCAGTCCAGCCACACAGCGTCCAACAAAGCCACAATGCTAGCCATGCCGCAGTTTGGCCTGCGCGACAACCTCGTCCGCTGTGAGCTGCTCAAGAACGAGGACATCTACACCTACCTGGAGAATTTCAGtttCTTCCTAGGCACGTACAATGTGAACGGCCAAACCCCCAAAGAAGGCCTCCGTCCATGGCTGGGTTCCACATCCACTCCCCCTGACATGTACTGCGTGGGGTTCCAGGAGCTGGAcctgagcaaggaggccttcttCTTCAACGACACGCCCAAGGAGACAGAGTGGATGAAGGCTGTGTCTGAGGGGCTGCATCCAGGCGCCAAGTACGCCTTAGTGAAACTGGTTCGTCTGGTGGGCATCATGCTGCTGTTCTATGTGAGGAATGAGCACGCCAAGCACATCTCTGAGATGGAGGCAGAGACCGTGGGCACCGGCATCATGGGTAGAatgGGAAACAAAGGTGCTGTGGCCATCCGCTTCCGCTTCCACAACTCTGACATATGTGTGGTCAACTCCCACCTGGCCGCCCACATTGAGGAGTACGAGAGGCGCAACCAGGACTACAAGGACATCTGCAGCAGGCTGCTTTTCCGCCAGCACGACCCCGCCCTGGCCCCACTCGCCATCATGAAGCATGATGTGGTCCTATGGCTGGGAGATCTCAACTACAGGCTAAGTGACCTTGATGTCGACAATGTGAAGGACTTAATCGCCAAGAAGGATTTTGAAACGCTGCACAGTTATGACCAGCTGAAGAGGCAGATCGATGAGAAGGCTGTTTTCGTGGGCTTTGTGGAGGGAGAAATCGGCTTCCTGCCCACTTACAAATACGACACCGGCTCCGATCAATGGGACACAAGTGAAAAGTGTCGTGTGCCGGCGTGGTGTGACCGGATCTTGTGGCGAGGCAAGAATGTGCGGCAGCTGCACTACCAGAGTCACATGGCCCTGAAGACCAGCGACCACAAGCCAGTCAGCTCCCTGCTGGAGATAGGGATCAAGCTGGTGAACGAAGAGTCCTACAAAAAGACATTTGAGGAAATTGTGCGCTCGCTGGACAAGATGGAGAACGAGTGCATTccatccctaaccctatccaCGCGAGAGTTCCAGTTCAAAGACGTGAAGTTCATGCAGCACCAGGCAGAGACTCTGACCCTCCACAACGACGGACAGGTCCCGTGCCAGTTTGAGTTCATCCAGAAGCTGGATGAGCCCACCTACTGCAAGCCCTGGCTCACCGCCAACCCGGCCAAGGGCTTCATCGCTCAGGGCGGCAACATGGACATCGACCTGGAGGTGTTTGTGAACCGCTCCACCGCCACGGAGCTCAACGCAGGCCGCCAGCAAATCGAGGACATCTTGGTGCTCCACCTGGAGCGGGGAAAGGACTACTTTCTCTCTGTGTCGGGCAACTACCTACCCAGCTGCTTCGGCTCGTCCATCCAGACCCTGTGTCAGCTGAGGGACCCCATCCAGGAAATGCCCCTGGAGACCCTCCGGGAGCTGACGTCATCAGGCGATGAGACCAGAACCGTAATCATCGATAAGCCCCTGGATATCCCTAAAGAGATATGGCAGATGGTGGACCACCTATACCGTAATGCTCCTAAACAGGGGGAACTATTTCAACAACCTGGGCTCCGCAGTGAATTTGTGGAGATAAGGGATTGCCTTGACACTGGCATGCCAGACTCTCTCCCTGGCAGTAACCACTCTGTGGCAGAAGCACTGCTCCTCTTCCTCGATGCCCTCCCTGAGCCTGTGGTCCCCTTCTCCCTGTACCAGCAGTGCCTGGAGTGCTGCTCCAACACCAGTCAGTGTAAAAAGGTTGTATCCTTGTTACCTCAGTGCCATAAAAACGTGTTTAACTATATAGCGGCTTTTCTCCGTGAGTTGTTGaagcattctacacacaataacctggATGTCAACATTTTAGCCACCATTTTTGCTGCCTTGCTACTGAGGTCACCCACGAAGCAGGACCTTGCAGAGAAGAGGAAGACGCAAGAGTTCTTTCAGCATTTCCTAGTCCAGGACCTCTCTTGAATAGAAGTGTTTTCCTGCCATGTCTTACATGCTACAAACTCTTTTAGACACTTGTAGTTTAATGTACAGCTCAGTATTTGTAATACATGTAATAAGTTCCTATTCATATAGATGGCTCTTTGTATAGGTACACAGTCAGTCCAATTGATTAGGCTTACGCTCCTTTGATTTGAAGTCAACTGTGTTTTGACAAACTATGTTTAAGCTGTTGATGCACAGCTTTTATTCAATCACTGAGCAGCTGTAGTAAACTGACCATTTTTAATGTATGTATATTTACCAGTTTATTTAAAGAGAAATATGTGTTGTGCTGTTTTGTGAAGGCAAAACAGTGGATCGTTATTTTATATATGAAAGTATTTCAAACAGTTGTGGTTTGGCTTTTTCCCCCCCCCATTTCTTTCCCATTTATCAAGCAAATTGAAAAAGTTAGTTTGGAATTTTAATAAACCCACTGTCACATTTA

Function

GO: NA

KEGG:

id description
K01099 INPP5B_F; inositol polyphosphate 5-phosphatase INPP5B/F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278895 lncRNA upstream 37219 30138334 ~ 30138653 (+) True G244294
TU278894 lncRNA upstream 37684 30137690 ~ 30138188 (+) True G244293
TU278892 lncRNA upstream 43865 30131799 ~ 30132007 (+) True G244291
TU278890 lncRNA upstream 46038 30129597 ~ 30129834 (+) True G244289
TU278836 lncRNA upstream 102753 30072875 ~ 30073119 (+) True G244239
TU278856 lncRNA downstream 15558 30211952 ~ 30217683 (+) True LOC110517613
TU279081 lncRNA downstream 86139 30282533 ~ 30282958 (+) True G244443
TU279083 lncRNA downstream 87435 30283829 ~ 30284178 (+) True G244445
TU279084 lncRNA downstream 89613 30286007 ~ 30287786 (+) True G244446
TU279086 lncRNA downstream 106995 30303389 ~ 30306750 (+) False G244447
XM_021595560.2 mRNA upstream 10201 30142523 ~ 30165671 (+) True LOC110517569
XM_036973791.1 mRNA upstream 53298 30095176 ~ 30122574 (+) False LOC110517541
XM_021595545.2 mRNA upstream 53298 30107928 ~ 30122574 (+) True LOC110517541
XM_036973780.1 mRNA upstream 863842 29290920 ~ 29312030 (+) True LOC110517404
XM_021595470.2 mRNA upstream 889395 29273147 ~ 29286477 (+) True thrap3a
XM_021595590.2 mRNA downstream 201 30196595 ~ 30217693 (+) False LOC110517613
XM_036964773.1 mRNA downstream 21926 30218320 ~ 30220984 (+) True LOC110517635
XM_021582784.2 mRNA downstream 64709 30261103 ~ 30281572 (+) False LOC110504010
XM_036973794.1 mRNA downstream 65259 30261653 ~ 30281572 (+) True LOC110504010
LOC110517644 mRNA downstream 92934 30289328 ~ 30293221 (+) True LOC110517644
TU278893 other upstream 38308 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 485076 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1141158 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2426146 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 2452078 27715043 ~ 27723794 (+) True LOC110516984
TU279342 other downstream 435376 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 669172 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 721637 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 748344 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 840123 31036517 ~ 31037252 (+) True G244956

Expression Profile