RNA id: XM_021595590.2


Basic Information

Item Value
RNA id XM_021595590.2
length 8268
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC110517613
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30196595 ~ 30217693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTATTTAATCATGGCACCATTAGGGAGGGGATGGGAAGAAAGTGCTAAGCTACCCGAAACATAAACCAAGTCGGCATTTGCGCTGCACCGGAACAAGTAAGCACGCCATCCTCTGTGCACACTCACCCACCAGAGGAGGCCAGCCCAGCCGGGACCATGAGCGAGCGTGGCCCTCGCACGGAGGCCTCCATGTTTTTGCAGGTGGAGGTGGACCACCTTGAGCGCGATGACAAAGAGGACAACGATGAAGACAAGATGGCGCACTACGACGACGACGACAAAGATGACGATGACCTGATGTCGGCACCCTCGGGCTCCCGCGTCTACGACCGCACTACGGTGCTCATCGAGCAGGACCCCATCCGGCTGgacgaggagggagaggaggaccatGGACACTGTGTCGGGGGGGACCACGACGATGGGGGCACTTTCCTggttgatgaagaggaggaggaggaagatgaggaaggcTCTATGACCTTCATGGGCGACCAGGACGGCATGTCGCAGGGATACGTGCATCACACCATCTCGCCCGACCAGATCCAGTTCATCATCAACCCGGGGTCCATGGCCATGCCACGCAACATCGAGGGGGCCACCCTCACCCTGCACTCGGAGTGTCCGGAGACCAAGCAAAGAGAGGTGAAGCGGTACCAGTGTATGTTTGAGGGCTGCACACGGACCTACAGCACGGCGGGCAACCTGCGCACACACCAGAAGACCCACCGGGGCGAGTACACGTTTGTGTGCAACCAGTTGGGCTGCGGCAAGGCCTTCCTCACCTCCTACAGCCTGAAGATCCACGTGCGCGTTCACACCAAGGAGAAGCCCTTTGAGTGCGACGTGCAGGGCTGCGAGAAGGCCTTCAACACTCTGTACAGACTGAAAGCGCACCAGAGACTGCACACAGGGAAGACGTTCAACTGCGAATCGGAGGGATGCACAAAGTACTTTACCACACTCAGTGACCTGAGGAAGCACATTCGCACTCATACAGGGGAGAAACCATTCCGGTGTGACCATGATGGTTGCGGCAAGGCGTTTGCTGCCAGCCATCACCTAAAGACGCACGTGCGGACACACACAGGGGAGAAGCCTTTCAACTGTCCCAGCAACGGCTGTGAGAAAGCATTCAGCAGCCAGTACAGTTTGAAGAGTCACGTCAGGGGCCATGGGGACAAGGGCCAGCCCTTCAGTGTCACCCTCACTCACCCCCTGTCCGAGGATGCAAATCATTCACTGTGCCTCAGTGACTTGAGCCTCATCTCGACTGACTCTGAGCTCAGAGAAAACATCTACAATTCTCAGAACTTGGACTTGAACAATGTTACCCCCGTGAGGATCTTCGAGCTCATGTTCCAGAGTCCGGAGAACAGTGTCAGTCAAGACGATGCACATCCTCACGAGAGCCTTGTCAAAGCTTTTGGCCAGGAGACTGGTCAGTCCACCATGGGCGATGGATCcacccccatctccttctcattctcccttgTCCCTTCCTCCTCATCGTCCTGTTCCCACCCACACTATCACCCTCACTCcgacaccacctccaccactgtCCTGGAGGCTTCCTCCCAGCTCCCTCTTAGCCAAACCCCCTCTTCCCAACCGCCAGCATCTCCTGCCACCATTAGTAATGTTACCGCAATCAGCTCCACCCAGCCCCTTGCCACCTTCGTACCCTTACCCACTGCCATGCAGACACCAGATATGCCTGCCCCCAACGTGGCGCTGCCCGTCCAGACCACTCCAATAGTGCCCTCTTCTGCGCCAGTATTGGTGCCAGGCCCAGCCCTCGCCAACGCGGCTCTGGGCACTGTagttgctgccacccccacagagactgTGCCGCTGCCGGCcgtggctcacacacacaccgtgcctTTGGCCAGCAACACCAACCCTGCCCTGGCGCCCCCAGCCTCTGCCCCCACCATCGCCCCAAGTCACAGCCACACCCAGAGCCTGCTGCAGCCCAGCATCGTAATGTCCGACCAGAACCTGCAGTGGATCCTTAACACCGCTGCCAACAGCCAACAGAACCCAGAGCAAGCGCCACACGGAGGTCCAAAAGTGGAGAAGGTCTTCTTTACCACAGCCATACCAGTAGGAGGCAATTTAGGCAACTCTGTCCAGCAGATCGGCCTCAGCCTGCCCGTCATCATCATCAAACAGGAGGAGTCCTGCCAGTGCCAGTGTGCCTGCAGGGACTCTTCTAAAGACAAGCTCTCGAACAAGAGCAGCAACGCCTCGGCAGCACCACAACAACAGCCCACAGTCCTCCCCGCTCCTCTACCACCCTCCGCTCCCGTGGCACTGCCCTTTCCCCCCGTACTCCCCCCGGCACCCTCTTCCCCCTTGTGCTGCCTCCTACCGCTCACCTCGGAAGTGAACGagtcccctcctcttccccaaaCAGGAGCGGTACTAGGACCGGGTAGCCCCTCGACCTCTGTACAGACGTTCCCCCCAGGAGTGGCCACGGCGACCACCAACTCCCCTCCTATCACGTCCATGGTGGCCAAACCATCCGTGTCGGAATTCCTGTCCCTGCAGAGCCCCGAGAGCACGGCCAACATCGAGGCTCTGCTACTGGTGACCAGCAATGATGACTTCACTCTGGCCACCGCTggcaccagcaccaccaccaacCCCTAGTGGACACTCAGGCTTCGTCCCTATTCTCCACTCTTCTCTTGCATACTCCCAGTCATGGATTTAAAAGCATTTTTGTGTAAGCGTTGGGCagagggagtttctaccattgTTAAATTAAAGGGAGTGTGCATATGCACACATTAGGAGAGGATATAGAATCAGGACGCAGCCGTACTAGCCGATTTACCCACTACGCATCCGCTTTTCAAGTATTGTAAGTGAAACTTAATGAGGGGGCTTATTTTGAAAAAGCAGCTAAATGCATGCCAGTCAAGAAGTGTTCTTAATTAGCTGGCTCTCCATCAAACAAGACAAGGTCCTAAGCACTGATCATTTGAAAGGCCCGAGGAACTATTGTGTGCTTCTAATATGGCGTGAAGCTGATTCCTGAGAGCAACAAAACATTGTCTATATCCATGTACTGTACAATAGTTCTTAACTGTAACTATTATGATTAGTTGGTAAGTGATTGACCAGAATGCACTGCATGTGAAGTGAATTGGAATTTCATCAACTATATTTCCTACAAGGAATTAGTGTTGCCATTCCCTTAAAAGCAATGTCTTGCTAATGCCATAATGTGAAGAGTAATTTCCAGTGTTTTACCTAAATTAGCTAGTGTAGTCCAGAtcattgttttgtcttttgtctcACTTTGTTCGTTTTTGTCTTTCTTTACAGGCATATTTACTAATTGAAAAAGATATTGCCTGTGACGCAATTTGCTTGCCTTTTGAATATAATTTAGAAGTAAATGCATTAGTGATAAGCCTATAACTTAATATTTAATttgtcaaaaaaatatatatttattggagagaaaaaaatctacATCACTGACATTAGACTGTCATCAAGTCACAGCTTATTCATCATCATTGTAATCATTGTTAATTCATTCCACTTTTCGCCCAAGGTTTCTtttttagtccccccccccctgttaCTGATTTTTGTTTTATGGAGCCCCTCTGTCTGTTTCAGAAAGCTGTTTCAACACAACGCAATTAATTGTATATCAAAGTTGTCAAAAGTCCTAAATTGAGTTTTGGTCAGCAAAACCTCTACACAATGAAATCATGAATCAATTATGAAAATACTTGCTCACAACACTGTTTCTCTGTGAATTATGACCCACTCAGGGATGCATCATGGCATATCTCATTTATACAGCTTGAGATTTTCCTTTATTTAATAAGAGATTGTCCATTTTGACATTTTAGAAGGCAACTGCCCGGATGCCCATCGATTGTAGTAGCCCCCTTTTTCGGCTGCACTCTCCCCTCTTTGTGCACCGTCTAATATGACTAGTTATCTGCGTTATTACTATGACTATTTAAATACCACTGCTGGCAGAAGGGGTTTCTGAAGGGTGTTGATGATGGTGtaaatacatttcatttaaaTATATGAACACTTATTCCTTCAGATTGTTTAAGAATGTATTTGTTTTGTATATACATTTTGAATATGTAGACCTTGGAGACTAAAGACAATACCCCCTGCTCTGCCCTTTGTCTTTGCATTCTGCCCCCATGCAGATGCTCTCACATCTTATGCAGAAGAGTTTAAAATTAAGCCTAATAATGGTTAGTTTTAGGGCCACTGGCTACTGTGCAGTCAACAtagtatttattttcaaatgtaaGTGTAAGTAACTTTCTTAGAGTATATGACAATATTGTTTCACATGGGACATAATGCAATGATTACAACTAAAAAATTGGAGAGAAGGCATTATGCCCAAATATTATGTGTAGAGCAACCTTGCCTTACTACAGGATATCTCACTTGCTGTGGCTTACTGAGCAGTCTCCTTGTCTTGTCAATCTTTGCCTATGGCTTGATTTGGACACGCTGCTTGACTACGTTCTCCTGTTTATCTAGTCTTGTTCAATGCCTTTTAGCAGCTGTCTACAAGTGGACAAAATTACATTGAAAAGAAATGCTTCATTTTGTTTGAAGATTTAACAGATAAATGTGCCAACAAATCAAATGATCCCAATTATTATTTTTAtgtaatttttttgtgaagatgtTACTGCAGAAATATACTGTAGACTGAAATTGTTTCTCTTGATTTTTTGTAGTACTGTATTGGAGACAACTTAATACTTTATTCTACAGATCACTACATCAATGTTGTAGTTGGAAATTAGAATTACATCAACATTTTAATTGCTACTTCACTGGCATTGATTGACAGCAGCTATCATGTTCTATTATTTAGCATGTAAAGGGTGACCGAGATTCAACCTAGGCGTCATCATGTATCATAGGATAACAGTACGCAGGAAATCTTTGTCTGGCAGACCTGAGTAGGAGAAATGTGTAAACTAACATGGGCTTTGCCCTTTTCCTGTTTTGAAATTGAACTGATACCAAAACTTGATGATAACCTGGAATATTGATTAATGTAGTTAGCACTTAAAATTGGGTCCACTAGAATGTGAATTATCAAATATTAAATAATTTGTTTCTTATTGATATTTAtactaaataaaaaatattaacgcaaccattttttaaagattttacGGAGTTAGTTCAGAAAAGGAAATcggacgtattgccaaattctctaaaacgatggatgtggcttatggtagagaaatgaacattcaattctctggcaaaagctctggaggccatttctgcagtcagcatgccaattgcgcgctctctcaaaacttgacatctgtggcattatgtgcccagcataaggtgcaccctgtgtaatgagcatgctttttagtcagcttcttgatatgccacacctgtcaggtgtatggattctcttggcaaaggagaaatgctcactaatagggatgtaaacaaatgtatgcacAAAATTAGAGAGAAGCATTTTgggagtatggaacatttcttggatcttatttattttcatgaaacatgggaccaacactttacatgctgcattaatatttttgttcagtataggtaTTCCCCCTGACAATGCTGGTCAATAACTaaatgtattgtaaatatgaatcCTGACCCACCCTCTTACTGCCCTCAACATGTTCACCTCCAATTCGATGCATACCTTTTTAAAGAAAATATCTATGCAATGATTTGACTGCAGTTTTCCTTAAAGTacaaaatgcaacaaaaaaaacctTACCAACCTTTGACGTCAATGTCTTGGCCAAAGTAATTCTGTTAAATCAATATTCAGGTTTGCTAATGTCAACTTTGAAGGCTCAACTTTCTCATTTGCGAAGCTCCATGTACGTAACCATTTTTGCTCACCAATCTTTCAGTATTCAACTTAGCGGTATGACCAACTTAGCATCCTATTTTGATCACCATGATCATCCATTTTATGTGAAGGTCCAATTTATTATGTGTGATGCATCATGTTTGAGGTGGGGCTGTGAGCCTGGGCattgaaatgtttttttattttttattattacccCCATTGCTTTCCATTGAATTGtctctttttttttacatgtacttGTTTTGCCTCCCATGTGAGTTACCTGGTTAAACACTAACTGGATTTGCTTCGGGAAAAAATTACTACAATATGATTCTGTTGTAAGAATTATTTGTGTCAAATGTTGTACGCTGCATCTTTTTTAAAGTTTTGGGTGAAAGACAATCATATTTTCTTGTGTTctcatactgtatgtgctgttttTGCTCAAGTCATCTCAATGAACTTTACGTTAATCTGTAAGGGTGATACAAATTTGGACCCGATTTGTTAGACCCATTGTTAGAATTGAAAGTGCTGGTTCTACCTTTGCTAGAAGATACTGACCCTACTGCTATgcttgtttacactgagctgcactaGACTCAAAATGCAATCATGGTTACATTAAGGCACTGGAGCCAGCACAAGATATGGGTGGGAAAACACCTCAATGCAGGGATGAGATATGCCACTGTACTCCAAAAAACTGCCATTTTCATCctcatgctagctagcagtagCCACAGCAGCCATTGTGGAATAGCAGATACCCACTAGTTACCACAACCACAAAGTCTAAATTGGCTGTATTGTAAAACGTCAAGAAAACAAGCTTTCTTACTGTAAGGAAAGGCATAAGATTAGCATtgcggttaaggttaggtttaaaattacattttggggaGAGAAATGGAAGAAATAGGTGGGGTTTATGACTGAAACTTTTATTTTCTTAATTTAAGGTAGGCACTGTGATTAGGTTTAAATCACAGTTTGGGAAGAGAAAGGGCAGGGTCTATGTCTGTAGTAGCTAGTGATGACCAAGGGCACGTCACATTGAACATAAAAAGctagctgattggctgactgccATTCCAAAATGGCTATGGTGAATACTGCTAGCTAGCAGGAGcacaaaaattataaaactaGCAATATTTCAATCTTCTCTGTGGATCTGTGTAAAGATAAAATTGAGTACAGTAGAATATCCCAGAGGTTACTTACCTCGCACGAGCTCCGCAGTGGCcagagcagcaggtagcctagcggtgttgggccagtaatcgaaaggtcgCTGAATCGAACCCCCAAGCCAaccaggtgaaaaatctgtctgtgccaatgagcaaggcacttaacccaaattgctctggataagagtgtttaCTACATTACTAAAATTTAAACGTAACCATGGTTCTGACCCCAGTAGAGCTGTTTAAACAAGGGTTGAGTCTGTCATGTTCAGCCTTTATGGAATAGATTTTACTTAACCTTTAGGTTAAATTGTCGGGCGAATAACAGCTCAAATGGGGATTTATTTTGTAGCCAATGGTCAGATGCTTAGAATGGTGAGTTCATAGGTTCAAAACACTGTCGGAGGCTTTGAAAAAGCAGTTTTTTATTTTGGAATTCTGTTCATGGTTAAGTACACATGATTATTTGAGCACTCAATATGTAAAATGAGGGGGAAATGTAATAATCCAGAGGAATGTCTTCAACACCCAAAGAGTGAGGAGTTGTGAAGGATTTCTATTTTTAAAAGAATGTATCATGTGAAATTGGTTTGCTTACGCTTGTTTTGTATGAAGTAGTATTGTATAATAAAGCAATTACTTTTTGAATTGAGAGCAATATAATACTAATGAAATCTTATCCCATTTTTGCCCAAGCAAAAAAGTTAGATAATCCATGATAGTTTTTATTGACATACAAAATGATTCACATTACCACCATGAGTAAAATCAGTCACTTCGGAGCAGGGAATGATCCATCGCTAAGGTTCTTCTCCTGTGGAGTTCAGAGAGATACTTCGGTTTGGTGGTTGACACATTTTTCAAAGTTTGAAGCATGGAGAAACATACCCTTAAAATACCCCGCAGGCCCACCTGGTCTTGGGAGGTCTTCAAGTAACTGTGCTGACCAAAACAAGGAGTTTATGTTTAGGTAATAAAATGAAGTTAAGTCACCCTACTAACCAGAGACCAATAGAATGTAAAACCTCATAATTCAGTAAAGCACATAAATGTAGTTGACCATAAATAAGGTTATTAATTGTATTTAGATGAAGCGTCTGGATACCTTCAGTTTACTACCTCCAATTAGAGGTACTTTTTGAAGAAGAAATTAAAGTCCCATTGCCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278895 lncRNA upstream 57942 30138334 ~ 30138653 (+) True G244294
TU278894 lncRNA upstream 58407 30137690 ~ 30138188 (+) True G244293
TU278892 lncRNA upstream 64588 30131799 ~ 30132007 (+) True G244291
TU278890 lncRNA upstream 66761 30129597 ~ 30129834 (+) True G244289
TU278836 lncRNA upstream 123476 30072875 ~ 30073119 (+) True G244239
TU279081 lncRNA downstream 64840 30282533 ~ 30282958 (+) True G244443
TU279083 lncRNA downstream 66136 30283829 ~ 30284178 (+) True G244445
TU279084 lncRNA downstream 68314 30286007 ~ 30287786 (+) True G244446
TU279086 lncRNA downstream 85696 30303389 ~ 30306750 (+) False G244447
TU279085 lncRNA downstream 85756 30303449 ~ 30306845 (+) True G244447
XM_021595572.2 mRNA upstream 201 30170759 ~ 30196394 (+) False LOC110517587
XM_021595578.2 mRNA upstream 201 30174028 ~ 30196394 (+) False LOC110517587
XM_021595584.2 mRNA upstream 201 30175872 ~ 30196394 (+) True LOC110517587
XM_021595560.2 mRNA upstream 30924 30142523 ~ 30165671 (+) True LOC110517569
XM_036973791.1 mRNA upstream 74021 30095176 ~ 30122574 (+) False LOC110517541
XM_036964773.1 mRNA downstream 627 30218320 ~ 30220984 (+) True LOC110517635
XM_021582784.2 mRNA downstream 43410 30261103 ~ 30281572 (+) False LOC110504010
XM_036973794.1 mRNA downstream 43960 30261653 ~ 30281572 (+) True LOC110504010
LOC110517644 mRNA downstream 71635 30289328 ~ 30293221 (+) True LOC110517644
XM_021595633.2 mRNA downstream 92492 30310185 ~ 30323571 (+) True rpa2
TU278893 other upstream 59031 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 505799 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1161881 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2446869 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 2472801 27715043 ~ 27723794 (+) True LOC110516984
TU279342 other downstream 414077 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 647873 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 700338 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 727045 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 818824 31036517 ~ 31037252 (+) True G244956

Expression Profile