RNA id: TU278856


Basic Information

Item Value
RNA id TU278856
length 5732
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC110517613
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30196595 ~ 30217693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTGGCCAAACCATCCGTGTCGGAATTCCTGTCCCTGCAGAGCCCCGAGAGCACGGCCAACATCGAGGCTCTGCTACTGGTGACCAGCAATGATGACTTCACTCTGGCCACCGCTggcaccagcaccaccaccaacCCCTAGTGGACACTCAGGCTTCGTCCCTATTCTCCACTCTTCTCTTGCATACTCCCAGTCATGGATTTAAAAGCATTTTTGTGTAAGCGTTGGGCagagggagtttctaccattgTTAAATTAAAGGGAGTGTGCATATGCACACATTAGGAGAGGATATAGAATCAGGACGCAGCCGTACTAGCCGATTTACCCACTACGCATCCGCTTTTCAAGTATTGTAAGTGAAACTTAATGAGGGGGCTTATTTTGAAAAAGCAGCTAAATGCATGCCAGTCAAGAAGTGTTCTTAATTAGCTGGCTCTCCATCAAACAAGACAAGGTCCTAAGCACTGATCATTTGAAAGGCCCGAGGAACTATTGTGTGCTTCTAATATGGCGTGAAGCTGATTCCTGAGAGCAACAAAACATTGTCTATATCCATGTACTGTACAATAGTTCTTAACTGTAACTATTATGATTAGTTGGTAAGTGATTGACCAGAATGCACTGCATGTGAAGTGAATTGGAATTTCATCAACTATATTTCCTACAAGGAATTAGTGTTGCCATTCCCTTAAAAGCAATGTCTTGCTAATGCCATAATGTGAAGAGTAATTTCCAGTGTTTTACCTAAATTAGCTAGTGTAGTCCAGAtcattgttttgtcttttgtctcACTTTGTTCGTTTTTGTCTTTCTTTACAGGCATATTTACTAATTGAAAAAGATATTGCCTGTGACGCAATTTGCTTGCCTTTTGAATATAATTTAGAAGTAAATGCATTAGTGATAAGCCTATAACTTAATATTTAATttgtcaaaaaaatatatatttattggagagaaaaaaatctacATCACTGACATTAGACTGTCATCAAGTCACAGCTTATTCATCATCATTGTAATCATTGTTAATTCATTCCACTTTTCGCCCAAGGTTTCTtttttagtccccccccccctgttaCTGATTTTTGTTTTATGGAGCCCCTCTGTCTGTTTCAGAAAGCTGTTTCAACACAACGCAATTAATTGTATATCAAAGTTGTCAAAAGTCCTAAATTGAGTTTTGGTCAGCAAAACCTCTACACAATGAAATCATGAATCAATTATGAAAATACTTGCTCACAACACTGTTTCTCTGTGAATTATGACCCACTCAGGGATGCATCATGGCATATCTCATTTATACAGCTTGAGATTTTCCTTTATTTAATAAGAGATTGTCCATTTTGACATTTTAGAAGGCAACTGCCCGGATGCCCATCGATTGTAGTAGCCCCCTTTTTCGGCTGCACTCTCCCCTCTTTGTGCACCGTCTAATATGACTAGTTATCTGCGTTATTACTATGACTATTTAAATACCACTGCTGGCAGAAGGGGTTTCTGAAGGGTGTTGATGATGGTGtaaatacatttcatttaaaTATATGAACACTTATTCCTTCAGATTGTTTAAGAATGTATTTGTTTTGTATATACATTTTGAATATGTAGACCTTGGAGACTAAAGACAATACCCCCTGCTCTGCCCTTTGTCTTTGCATTCTGCCCCCATGCAGATGCTCTCACATCTTATGCAGAAGAGTTTAAAATTAAGCCTAATAATGGTTAGTTTTAGGGCCACTGGCTACTGTGCAGTCAACAtagtatttattttcaaatgtaaGTGTAAGTAACTTTCTTAGAGTATATGACAATATTGTTTCACATGGGACATAATGCAATGATTACAACTAAAAAATTGGAGAGAAGGCATTATGCCCAAATATTATGTGTAGAGCAACCTTGCCTTACTACAGGATATCTCACTTGCTGTGGCTTACTGAGCAGTCTCCTTGTCTTGTCAATCTTTGCCTATGGCTTGATTTGGACACGCTGCTTGACTACGTTCTCCTGTTTATCTAGTCTTGTTCAATGCCTTTTAGCAGCTGTCTACAAGTGGACAAAATTACATTGAAAAGAAATGCTTCATTTTGTTTGAAGATTTAACAGATAAATGTGCCAACAAATCAAATGATCCCAATTATTATTTTTAtgtaatttttttgtgaagatgtTACTGCAGAAATATACTGTAGACTGAAATTGTTTCTCTTGATTTTTTGTAGTACTGTATTGGAGACAACTTAATACTTTATTCTACAGATCACTACATCAATGTTGTAGTTGGAAATTAGAATTACATCAACATTTTAATTGCTACTTCACTGGCATTGATTGACAGCAGCTATCATGTTCTATTATTTAGCATGTAAAGGGTGACCGAGATTCAACCTAGGCGTCATCATGTATCATAGGATAACAGTACGCAGGAAATCTTTGTCTGGCAGACCTGAGTAGGAGAAATGTGTAAACTAACATGGGCTTTGCCCTTTTCCTGTTTTGAAATTGAACTGATACCAAAACTTGATGATAACCTGGAATATTGATTAATGTAGTTAGCACTTAAAATTGGGTCCACTAGAATGTGAATTATCAAATATTAAATAATTTGTTTCTTATTGATATTTAtactaaataaaaaatattaacgcaaccattttttaaagattttacGGAGTTAGTTCAGAAAAGGAAATcggacgtattgccaaattctctaaaacgatggatgtggcttatggtagagaaatgaacattcaattctctggcaaaagctctggaggccatttctgcagtcagcatgccaattgcgcgctctctcaaaacttgacatctgtggcattatgtgcccagcataaggtgcaccctgtgtaatgagcatgctttttagtcagcttcttgatatgccacacctgtcaggtgtatggattctcttggcaaaggagaaatgctcactaatagggatgtaaacaaatgtatgcacAAAATTAGAGAGAAGCATTTTgggagtatggaacatttcttggatcttatttattttcatgaaacatgggaccaacactttacatgctgcattaatatttttgttcagtataggtaTTCCCCCTGACAATGCTGGTCAATAACTaaatgtattgtaaatatgaatcCTGACCCACCCTCTTACTGCCCTCAACATGTTCACCTCCAATTCGATGCATACCTTTTTAAAGAAAATATCTATGCAATGATTTGACTGCAGTTTTCCTTAAAGTacaaaatgcaacaaaaaaaacctTACCAACCTTTGACGTCAATGTCTTGGCCAAAGTAATTCTGTTAAATCAATATTCAGGTTTGCTAATGTCAACTTTGAAGGCTCAACTTTCTCATTTGCGAAGCTCCATGTACGTAACCATTTTTGCTCACCAATCTTTCAGTATTCAACTTAGCGGTATGACCAACTTAGCATCCTATTTTGATCACCATGATCATCCATTTTATGTGAAGGTCCAATTTATTATGTGTGATGCATCATGTTTGAGGTGGGGCTGTGAGCCTGGGCattgaaatgtttttttattttttattattacccCCATTGCTTTCCATTGAATTGtctctttttttttacatgtacttGTTTTGCCTCCCATGTGAGTTACCTGGTTAAACACTAACTGGATTTGCTTCGGGAAAAAATTACTACAATATGATTCTGTTGTAAGAATTATTTGTGTCAAATGTTGTACGCTGCATCTTTTTTAAAGTTTTGGGTGAAAGACAATCATATTTTCTTGTGTTctcatactgtatgtgctgttttTGCTCAAGTCATCTCAATGAACTTTACGTTAATCTGTAAGGGTGATACAAATTTGGACCCGATTTGTTAGACCCATTGTTAGAATTGAAAGTGCTGGTTCTACCTTTGCTAGAAGATACTGACCCTACTGCTATgcttgtttacactgagctgcactaGACTCAAAATGCAATCATGGTTACATTAAGGCACTGGAGCCAGCACAAGATATGGGTGGGAAAACACCTCAATGCAGGGATGAGATATGCCACTGTACTCCAAAAAACTGCCATTTTCATCctcatgctagctagcagtagCCACAGCAGCCATTGTGGAATAGCAGATACCCACTAGTTACCACAACCACAAAGTCTAAATTGGCTGTATTGTAAAACGTCAAGAAAACAAGCTTTCTTACTGTAAGGAAAGGCATAAGATTAGCATtgcggttaaggttaggtttaaaattacattttggggaGAGAAATGGAAGAAATAGGTGGGGTTTATGACTGAAACTTTTATTTTCTTAATTTAAGGTAGGCACTGTGATTAGGTTTAAATCACAGTTTGGGAAGAGAAAGGGCAGGGTCTATGTCTGTAGTAGCTAGTGATGACCAAGGGCACGTCACATTGAACATAAAAAGctagctgattggctgactgccATTCCAAAATGGCTATGGTGAATACTGCTAGCTAGCAGGAGcacaaaaattataaaactaGCAATATTTCAATCTTCTCTGTGGATCTGTGTAAAGATAAAATTGAGTACAGTAGAATATCCCAGAGGTTACTTACCTCGCACGAGCTCCGCAGTGGCcagagcagcaggtagcctagcggtgttgggccagtaatcgaaaggtcgCTGAATCGAACCCCCAAGCCAaccaggtgaaaaatctgtctgtgccaatgagcaaggcacttaacccaaattgctctggataagagtgtttaCTACATTACTAAAATTTAAACGTAACCATGGTTCTGACCCCAGTAGAGCTGTTTAAACAAGGGTTGAGTCTGTCATGTTCAGCCTTTATGGAATAGATTTTACTTAACCTTTAGGTTAAATTGTCGGGCGAATAACAGCTCAAATGGGGATTTATTTTGTAGCCAATGGTCAGATGCTTAGAATGGTGAGTTCATAGGTTCAAAACACTGTCGGAGGCTTTGAAAAAGCAGTTTTTTATTTTGGAATTCTGTTCATGGTTAAGTACACATGATTATTTGAGCACTCAATATGTAAAATGAGGGGGAAATGTAATAATCCAGAGGAATGTCTTCAACACCCAAAGAGTGAGGAGTTGTGAAGGATTTCTATTTTTAAAAGAATGTATCATGTGAAATTGGTTTGCTTACGCTTGTTTTGTATGAAGTAGTATTGTATAATAAAGCAATTACTTTTTGAATTGAGAGCAATATAATACTAATGAAATCTTATCCCATTTTTGCCCAAGCAAAAAAGTTAGATAATCCATGATAGTTTTTATTGACATACAAAATGATTCACATTACCACCATGAGTAAAATCAGTCACTTCGGAGCAGGGAATGATCCATCGCTAAGGTTCTTCTCCTGTGGAGTTCAGAGAGATACTTCGGTTTGGTGGTTGACACATTTTTCAAAGTTTGAAGCATGGAGAAACATACCCTTAAAATACCCCGCAGGCCCACCTGGTCTTGGGAGGTCTTCAAGTAACTGTGCTGACCAAAACAAGGAGTTTATGTTTAGGTAATAAAATGAAGTTAAGTCACCCTACTAACCAGAGACCAATAGAATGTAAAACCTCATAATTCAGTAAAGCACATAAATGTAGTTGACCATAAATAAGGTTATTAATTGTATTTAGATGAAGCGTCTGGATACCTTCAGTTTACTACCTCCAATTAGAGGTACTTTTTGAAGAAGAAATTAAAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU278895 lncRNA upstream 73299 30138334 ~ 30138653 (+) True G244294
TU278894 lncRNA upstream 73764 30137690 ~ 30138188 (+) True G244293
TU278892 lncRNA upstream 79945 30131799 ~ 30132007 (+) True G244291
TU278890 lncRNA upstream 82118 30129597 ~ 30129834 (+) True G244289
TU278836 lncRNA upstream 138833 30072875 ~ 30073119 (+) True G244239
TU279081 lncRNA downstream 64850 30282533 ~ 30282958 (+) True G244443
TU279083 lncRNA downstream 66146 30283829 ~ 30284178 (+) True G244445
TU279084 lncRNA downstream 68324 30286007 ~ 30287786 (+) True G244446
TU279086 lncRNA downstream 85706 30303389 ~ 30306750 (+) False G244447
TU279085 lncRNA downstream 85766 30303449 ~ 30306845 (+) True G244447
XM_021595572.2 mRNA upstream 15558 30170759 ~ 30196394 (+) False LOC110517587
XM_021595578.2 mRNA upstream 15558 30174028 ~ 30196394 (+) False LOC110517587
XM_021595584.2 mRNA upstream 15558 30175872 ~ 30196394 (+) True LOC110517587
XM_021595560.2 mRNA upstream 46281 30142523 ~ 30165671 (+) True LOC110517569
XM_036973791.1 mRNA upstream 89378 30095176 ~ 30122574 (+) False LOC110517541
XM_036964773.1 mRNA downstream 637 30218320 ~ 30220984 (+) True LOC110517635
XM_021582784.2 mRNA downstream 43420 30261103 ~ 30281572 (+) False LOC110504010
XM_036973794.1 mRNA downstream 43970 30261653 ~ 30281572 (+) True LOC110504010
LOC110517644 mRNA downstream 71645 30289328 ~ 30293221 (+) True LOC110517644
XM_021595633.2 mRNA downstream 92502 30310185 ~ 30323571 (+) True rpa2
TU278893 other upstream 74388 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 521156 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1177238 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2462226 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 2488158 27715043 ~ 27723794 (+) True LOC110516984
TU279342 other downstream 414087 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 647883 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 700348 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 727055 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 818834 31036517 ~ 31037252 (+) True G244956

Expression Profile