RNA id: XM_021595656.2


Basic Information

Item Value
RNA id XM_021595656.2
length 1411
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110517739
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30363161 ~ 30367437 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGAGTTGCTTTCAGAACACTCTACAACATTACCGTTCTTGAATGCCCCATGCTCCAACCCGCTGCGAAATGCGCGGATCTGGGTGACAAGCTAGATACTAACTAGCTATTCCTCTCTATCACACGGGCTCAATCAACTCTGTTCTGTCACTGCTGATAGTGGCATCTGTGTAGCGGTTGCTTTTGAACGTTTGTTTGGAGtatcctagctagctagtttcaaTTGAACCGTATTTAGCtatgagctaacgttagctaggttgcAAGTTAGCTTGAGTTGGTACAGTGCAGTTTGGGAAGGAAGAAGCAGATACGCGACAGTTTAAGGACAAATATAAGTTAACGTTACCTGTCTGACACTGACGTGTGATGGAGGCCCCACCAGTCTCAGTGCTGCCCATTACGGGGGGCACAATCAACATGATGGAGTACCTGCTGCAAGGCAGCGTCTTGGACCAGGCCCTCGAAAGCCTATTGCACCGCCTCCGGGGCCTTTGTGACAACATGGAACCCGAGACGTTCGCCGACCATGAGCTGGTCTACCTCCTGAAGGGCCAGCAGGGCAACCCGTTCCTGCTACGTGCCCGCCGCTCCCTCTCCCACCCAACAGTTCCCTGGCACCTGCGCTACCTGGGCCAGCCGGAGGTGGGTGACAAGTCCCGCCACGCGCTGGTTCGCAACTGTGTGGATGTGGCCACCTCGCACAGCCTGCCCGACTTCCTCAACGAAATGGGCTTCCGCATGGACCACGAGTTCGTAGCCAAGGGACACATTTTCCGTAGAGGCGTGCTCAAAGTGGTGGTGAGTAAACTGTCACGCATCCTGGTCCCTGGGAATACAGAGAACACTGAGCCGCTGTCACTCTCCTACCTGGTGGAGCTCAGTGTGTTGGCCCCCGCAGGCCAGGATACCATGTCGGAGGACATGCGCAGCTTCGCTGAGCAGCTCAAGCCCCTGGTTCACCTGGAGAAGATTGACCCCAAGAGACACATGTAAGAAGGGGTGTGTTAAGATGAGCCTCTGTTGGCAGTCATGGACAAAGTGGAGTttttattaaaatgtattttttgggaCTTAATTTTGTATGATTCCTATAAGAAAGTGCTTTCCCacagtcctttgtctctgtgaagGAACTCTATATCTCACAATCTTGATGTGTATCTCGTACATTTGGAGAAGGACCATCTGCCATTAGGATGTTAGTAGTGTTTGAAAAGGACTTCACAAGAGGATTGACACAGCCAACATGGACGATGTGACATGAGGCTTTGAATGAGTCAATAAATAACAATATCTATTCAGTGCTGAACAATGGTTTTGTGTGATGGTGATAGTGCTTTGTACTGTGTTGGGTATGTTTCCAGAAATGCACAGCTATAGTGTTTATTAAACATGATTTTTCTCAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279071 lncRNA upstream 4901 30358819 ~ 30359857 (+) True G244433
TU279085 lncRNA upstream 57913 30303449 ~ 30306845 (+) True G244447
TU279086 lncRNA upstream 58008 30303389 ~ 30306750 (+) False G244447
TU279084 lncRNA upstream 76972 30286007 ~ 30287786 (+) True G244446
TU279083 lncRNA upstream 80580 30283829 ~ 30284178 (+) True G244445
TU279110 lncRNA downstream 7454 30374891 ~ 30375142 (+) True G244466
TU279125 lncRNA downstream 28216 30395653 ~ 30395929 (+) True G244481
TU279126 lncRNA downstream 29696 30397133 ~ 30397350 (+) True G244482
TU279131 lncRNA downstream 39588 30407025 ~ 30407245 (+) True G244487
TU279112 lncRNA downstream 45842 30413279 ~ 30414895 (+) True G244468
XM_021595618.2 mRNA upstream 22280 30336633 ~ 30342478 (+) True LOC110517685
XR_005051424.1 mRNA upstream 26873 30337723 ~ 30337885 (+) True LOC118964376
XM_021595633.2 mRNA upstream 41187 30310185 ~ 30323571 (+) True rpa2
LOC110517644 mRNA upstream 71537 30289328 ~ 30293221 (+) True LOC110517644
XM_021582784.2 mRNA upstream 83186 30261103 ~ 30281572 (+) False LOC110504010
XM_036973797.1 mRNA downstream 8138 30375575 ~ 30412306 (+) True LOC110504017
XM_036973802.1 mRNA downstream 181134 30548571 ~ 30576208 (+) False LOC110517766
XM_036973798.1 mRNA downstream 181148 30548585 ~ 30576208 (+) True LOC110517766
XR_005051413.1 mRNA downstream 244955 30612392 ~ 30612447 (+) True LOC118964363
XM_021595725.2 mRNA downstream 247761 30615198 ~ 30627079 (+) True LOC110517876
TU278893 other upstream 227194 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 673962 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1330044 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2615032 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 2640964 27715043 ~ 27723794 (+) True LOC110516984
TU279342 other downstream 264333 30631770 ~ 30632533 (+) True G244691
TU279535 other downstream 498129 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 550594 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 577301 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 669080 31036517 ~ 31037252 (+) True G244956

Expression Profile