RNA id: TCONS_00028845


Basic Information

Item Value
RNA id TCONS_00028845
length 1511
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_014592
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 10454305 ~ 10478229 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGATCTCTATAGAGCATGAGTGGACTAACAATCTTGGTATTCATGCTTTGGATATTGAAAGGTGCTCCCAGCAACATGTGGGAAATCAAGCTGCCTCAGAAAATAGATGCCATAAGTGGCTTCTGTGTTCATATTCCATGTCAGTTTGAGATCCCCGACTCATTCAAACCACTCCTAAGCCAATCAGCTGAAGCGCTGTGGAAAAAAACAGACATAGAAGGAGCAACTGTGTTCAGTTCAGCCAGAAAGACGACATCTCTTCTAAACGGAAACGTGATTGGCAACATCCTAAACAATAATTGCACCACTGTGTTTCACAACTTTCCTGCTGGATTCGGTGACACGTATTTCTTCAGGCTTCAGGGTCATGAAAATCTCAAGTACACATTTAAGCAAGGAGTGAGAATCACAGTTCATGAAGATGTTCTACCGCCTGTCCTGAACCCACATGCCCAGGTACTGGAGGTTTTAGAGGGTACCAAGCTGACCGTGAGCTGCTCCACTGTGATCTCCTGTCCCTCAGTGCAGCCCTTGATGCAGTGGAACACACAGCTAGAAGAGCTGCTGCCACCAGCTCTCCAGAAGGATGAGGTTGGACAGACATTGCTGGTCTCCTCTCAGATGTTTAACGCAACGCCTCTGAATGACCAGTTTAAAATCTCCTGCTCCCTTCTGTACATGCAGGGCACCAAAACACCAGCTGAGAGCAGCATTACCCTGAGAGTCCTGTATGCTCCCAGAAACACCATAGCTCTGGTGAGCCCATCGGGAGTGTTGTCTGAAGGCAGTGTGGTCACGCTGAGATGCCAAAGTGATGCCAACCCTGCAGTCCAGCGCTATGAGTGGTACAAATACAATGGAAATGGGAAGCTTGAGCTGCAGAATCAAGGACAGACTATCACAATGACAGCCGGGGTTGACGTTCAGGGACTTTATGTCTGCAAGGTCTACAATAATCGTGGGATTGACCAGTCCAAGGCTGTCTCTGTGAGCATAAATGGCTTCTGAAAATACAAGAGGACTCATGACATACGCCAGCCTGCACAAAACCAGCGACTCAGTATACAATGTCATACAGCCAAGAGCCAACAGATCTGAAGATGACTACGAAAACAGACACTTGAGCAAACAACAGTCCAGCTCCTAACTATGCAGCCATAAGAGTTAACAAGACACAAAGTGCTGTAGTGCCCACATTGTAGATGCAGGTTTCTGACTCCAATCATTTTCTCAGTATTTCGCAAAAATTAAATTGGCAAATGTGtaaattattcaatcaaaaagACAAAACTGGTAACATCATACAGTTTATAGgttcttgtgttttattttgagatgtatacactactgttcaaaCATTTGTCATTTTGTAAATAATTGAATACTTTTGTTCAGCTTAAAAATATAGTTATCAAAAGTGACAAACATGTTTATTGTATAAAGTTGAAGGATATTTATGTGTGAAATAAAGGTCGTTCTTTTAAAGAATGACAATGTTTttgagccccccc

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-151 No description available

Ensembl:

ensembl_id ENSDART00000142937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00028835 lncRNA downstream 135343 10313927 ~ 10318962 (-) True XLOC_014586
TCONS_00029757 lncRNA downstream 547366 9904324 ~ 9906939 (-) True XLOC_014578
TCONS_00028805 lncRNA downstream 770797 9676517 ~ 9683508 (-) True XLOC_014572
TCONS_00030166 lncRNA downstream 844793 9594867 ~ 9609512 (-) False XLOC_014570
TCONS_00028866 lncRNA upstream 380893 10859122 ~ 10860449 (-) False XLOC_014603
TCONS_00028865 lncRNA upstream 380965 10859194 ~ 10864799 (-) False XLOC_014603
TCONS_00028870 lncRNA upstream 397504 10875733 ~ 10876830 (-) False XLOC_014603
TCONS_00030168 lncRNA upstream 741532 11219761 ~ 11227568 (-) True XLOC_014612
TCONS_00028909 lncRNA upstream 1656562 12134791 ~ 12138739 (-) False XLOC_014624
TCONS_00028844 mRNA downstream 22171 10429810 ~ 10432134 (-) True XLOC_014591
TCONS_00028843 mRNA downstream 29165 10415484 ~ 10425140 (-) True XLOC_014590
TCONS_00028842 mRNA downstream 58622 10379248 ~ 10395683 (-) True XLOC_014589
TCONS_00028841 mRNA downstream 59374 10375782 ~ 10394931 (-) False XLOC_014589
TCONS_00028840 mRNA downstream 80675 10356346 ~ 10373630 (-) True XLOC_014588
TCONS_00028847 mRNA upstream 59214 10537443 ~ 10551394 (-) False XLOC_014593
TCONS_00028846 mRNA upstream 59214 10537443 ~ 10551394 (-) False XLOC_014593
TCONS_00028848 mRNA upstream 63543 10541772 ~ 10554240 (-) False XLOC_014593
TCONS_00028849 mRNA upstream 63543 10541772 ~ 10554352 (-) True XLOC_014593
TCONS_00028850 mRNA upstream 133559 10611788 ~ 10612774 (-) True XLOC_014594
TCONS_00028825 other downstream 212194 10238453 ~ 10242111 (-) True XLOC_014584
TCONS_00028819 other downstream 330958 10123233 ~ 10123347 (-) True XLOC_014581
TCONS_00028818 other downstream 441691 10012498 ~ 10012614 (-) True XLOC_014580
TCONS_00028791 other downstream 1601650 8852540 ~ 8852655 (-) True XLOC_014556
TCONS_00028774 other downstream 2628772 7825395 ~ 7825533 (-) True XLOC_014543
TCONS_00028853 other upstream 158140 10636369 ~ 10646822 (-) False XLOC_014597
TCONS_00028860 other upstream 213937 10692166 ~ 10730478 (-) False XLOC_014599
TCONS_00028862 other upstream 227230 10705459 ~ 10705475 (-) True XLOC_014600
TCONS_00028867 other upstream 380988 10859217 ~ 10860466 (-) False XLOC_014603
TCONS_00028885 other upstream 715020 11193249 ~ 11193363 (-) True XLOC_014611

Expression Profile

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