RNA id: XM_021595704.2


Basic Information

Item Value
RNA id XM_021595704.2
length 1993
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110517778
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30577798 ~ 30591085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCATACAATAAATTATACCGGAAGTTAGACCCAGCGGTCAGTTTCGTTCCACATCACATCCGCTGAGCAACAGCACAGCAGAAGTCAatttttgtgtttttgtatttctgagCACAGCAGTGCAGTAAACACTTTCAACAACTGGTGAGAACTGCCTTGTAGACATGGACTCCAAGGCAGGGGATCTCTTCAGCGCTGAGCCAGCCGACGCTGCTGGATCGGGAGGTGTCATGGGAAGTTTACCACCCTGGCTTTCTGCCTTGCCTCACAGGCTGTGGCTGCCCAAAGGCCTCTCGCCCAGTGTGGCCAAGGAGTGGTTTGATCGTCGCCGTGCGTCCATCCGTCCCTGGGCTGGCTTCGTGGATCACAGGAAGTTCACCAAGCCCCGCAACTTTGGTGAACTGTGCCAGAGGGTGGTGCGCAACTTTGACACCTACAACAGCAACTACACCTTCATCTTCCTCGGCCTCATCCTCTACTGCATTATCAGCTCTCCCATGCTGCTGATTGCTTTGGCAGTGTTTGTTGGTGCCTTCTACATCATCCACCTCAAGTCCCTGGAGTCTAAACTGGTCGTCTTTGGAAAAGAGGTGACCGGACCTCACCAATTGGGTCTGGCTGGGGCGGTCTCTTTCCCTGTGTTCTGGTTGGCTGGTGCAGGTGCTGCAGTGTTTTGGGTCCTGGGCGCGACGATGTTTGTGATTGGCTCTCACGCTGCCTTCCGAGAGCTGGAGGGAGGATCGGAAATGGAGGAGCTCTTCATGGAGCCTGTGTGAAGGCATTGtgatagaaaaatctgtatatctgtgccattatagcatctgtgacagcattggcagcgccattgaggctacaACCCATAAGAATCCCCACGCGggtgactactttaaaatggcagAAGCACAGTGGAAGCCCTCAATGttgctgcccatgctaaaacagccttttggccactagaggcctcttaTCTTTCTCTGTGTGGACCCTCAACACTCACCTTTGACCTTTTTTAAAAAATACAACACAGAATGCACCTTGTCATGCCTCTGAAGTGATTTGCTGTTACTGACCCTCTACAACTCTGTAAAGACCCTAATAGTACTCAATTTAGAAGAATATGTTGATTGACTGTCGTACGCACAAAGAGTGACTGAGACGTGGTTCGTGTACCTCAGCACACTTCATACTGTATGCCTACTTCATACTGTCTTTTCCAAATGTGGCTGATACCTGTCATTTTGTGTTTAATATCAGTCGGCCTTTTGTTTATTGCCTCTACCTTCTGTTTTAATGTTCCCTTGTGGATATCTAATAATTACAAAATGTCCCTCGGTCAACTCAAGACCTGACATGTTACAAAGAACATCGCCACAGTAATAATtcagatttgtttaaaaaaatcctATATAGCTGATGTTGACTAAGTACTCAGTGAGCACCATTAAACTGAATGAGGGAAGGAACATCAAATCGCCAACGCTTCTCTGACTGTGGAAGAAGTGCCATTTGCAGCTCTACAATGTATTAATCCAACTAGAAGGAATGGTTCTTTGAGACAAATTGCATTTTCTTTAAAGCAATGCTTAGTGGATATTCCAGATACCTAATGGTGATCAAGCATTATGTTTAAATCATATTTTGTATTGTACCTACTGCATCTACTTTTAGTCGTGTGCAGGCATGTGGTGCAGTGTTGATGGGTAAACTTTTCATAATTTATTAGCTCTACTTTATGGCTTTGATATTTAAAGAtcaatatattatttttttaaaatatagatTTCATACTTGTCATGCTATCTTTTTGCTATTTTTTGGGTATTTTTAATGACAATTGGGAAGTGCAATAAACTATCCTACCTAAGATATTGTGAGTGTGTGAGGAAGTCCATGCATGAATTCTGAAATATTTGTGTCCCTTTTGCGCATATTATTTATTTGTGGTGATTTAAAACATTACATTAAAAGGTATTAAAGGTTGTGTGTATATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279822 lncRNA downstream 1581 30518427 ~ 30576217 (-) False G245127
TU279912 lncRNA upstream 31029 30617895 ~ 30619600 (-) True G245204
TU279937 lncRNA upstream 55488 30642354 ~ 30652907 (-) True G245219
TU279889 lncRNA upstream 78337 30665203 ~ 30667510 (-) False G245188
TU279890 lncRNA upstream 78337 30665203 ~ 30667510 (-) False G245188
TU279891 lncRNA upstream 78337 30665203 ~ 30667510 (-) True G245188
XM_021595639.2 mRNA downstream 216028 30343960 ~ 30361770 (-) False LOC110517711
XM_021595643.2 mRNA downstream 216028 30343960 ~ 30361770 (-) False LOC110517711
XM_021595649.2 mRNA downstream 216028 30345809 ~ 30361770 (-) True LOC110517711
XM_021595606.2 mRNA downstream 241626 30323757 ~ 30336172 (-) True LOC110517657
XM_021595611.2 mRNA downstream 273245 30298757 ~ 30304553 (-) True smpdl3b
XR_005042958.1 mRNA upstream 5237 30592103 ~ 30593827 (-) True LOC118951153
XM_021595716.2 mRNA upstream 20098 30606964 ~ 30611799 (-) True LOC110517847
XM_021595792.2 mRNA upstream 110941 30697807 ~ 30710194 (-) False gnb3a
XM_021595782.2 mRNA upstream 110941 30697807 ~ 30710196 (-) True gnb3a
XM_021595796.2 mRNA upstream 127040 30713906 ~ 30725406 (-) True p3h3
TU279011 other downstream 360209 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 360686 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 378028 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 400390 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 448584 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 358087 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 975679 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2832563 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3770409 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 4302640 34889506 ~ 34889954 (-) True G249978

Expression Profile