RNA id: XR_002472614.2


Basic Information

Item Value
RNA id XR_002472614.2
length 4422
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110517778
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30577798 ~ 30591085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacccATGGAAAGACGTGATTCCGATGCTTATGCGATATCATTGTTTAGTTTCTTTGCCATTGAGGCTGAGATAAAACCTTCTATAGCCTAGGAGACTGATCATGaattgattaagctattcactttctgtacaatataatatttttttttacattgggtTAAGCCATggaagaagagtagccagcagttaaagcttACATTTGTCCGCGTCGGTTGGCCTACTCGTTCtaagggtggaaaggtaggcctgaCTTTTACCACGCTCAGTTTCCTAACGACGTCTCATATTTAATTATTTGCAAATAGGGACAGTTTcgttgcaaacaagacacactgatttggcattggagaaatgTGATAAAATTAACACAAGggcctatctctctgtccattcttagcctGTAATGTCGGTAGTTTGTGTGGTATTAACAAATATTGAGATTCGGATCATGTGACTTGAGACTTGTTTGTGACTCGAACAATAGTGACTTGGTCCTCCCCCTGAGTGGTACAGATAAGGAGCGAAATTAATATTCCTTATCGTTTATGAAATGGAGAATGTTCATAGAAATCCGAACTGACGATGTCCACTCCACTCCTGTAGGTAGCGACATTGCAGAATGCGTTAAGCCGTGGTGCGCACTCTACGCATGCTTTTTTTTTGGCACAGCAGATCCATGAACATCTATCATTGATGAACGAAGTTGTTGTCAAATAATAGCGTCGTCACTGattgttagttagctagcacTAGCATTCTGTAAACATGTCTAAAATACAGTTGTTGAGAGCGTTTCTCAACCAGCGGCTAACTGTGGCTGCTGATGAGATATTCGGGGCAGTTGAAAAAACGATAGCTGAGTACCAGGAAGAGGTTTCCCGTTCGAAAAAGGAGAACGACCGTCTACAGAATATTCTTGACATCGTTATTAAACCTGAGATAAAGTTACAAAGAGCAGACCTCCAGCAGCTCACTGTATTGGACGAGGAGGTTCACCCTGAGCAGCAGCCCTGTGTGCAGGATTGGAGCCCTAGTCTTGGACAGGAGGACAGCGAGCCCATATGGATCAAAAAGGAGCAGGAGGAACTCAAAAAGCAACTTcagtggctggagtctgacaccAGAGAGTTCATATTTGATCCTTTCTGTGTAAGTGATTATGATCAGGACCCAACTCAGCCCTTGCAAATCCAAAGTGAGGAAAATAGGGAGAGAGATTCTCAACCAAACGTTGTAACTGGACAGATCAAAACAGAACCTGATGAAGAGGACTACAGAATATCAGAACCAACCTGTTCTTCAGCTCAGAGTACAAATAGTGAACATGTCAATGGAATGGAAAGCAAAGGAGCCCAGTCTCTTTTAAAGTCACACAAACCAAAgaccacaaaaaaacaaaaaagaaaacaaactTATAGCAGTGCAAATGGCATGAAATGTACTCCCTGTTCTTGTAAGGTTTGTGGCAGGTCTTTTCGGTACAAGCGTCCCTTTTTTAATCATGTGCAAAGTCATGCACATATAGAGGATAAAGAacgtgtctgtggtgtgtgtggaaAGCACCTAGATTCTAAAGAGAATATGAAAGATCACCTCCAAACTCACATCGTAGCTGAGCCTGAGTTTTGTCATGTTTGTGGTAAAACGTTCACCACGAAGCTTAGGCTGAAAAAGCACATGAgggttcacacaggagagaaaccatatcGCTGCGATGATTGTGGCAGGTGTTTCAGTGATGCCGCCAATTTGATCGGACACAAAAGGACTCACACGGGCGAGAAACCATATTGCTGCCAGGAATGTGGCCAAGGATTCACTCAAAGTGGACATCTGGTTTTGCACAGGAGGAGACATACTGGGGAGAAGCCATATCTCTGTTCTGTTTGTGGCAAAAGTTTCAGCACCAGATCAAATTATACAGGACACATGAGagttcacacaggggagaaaccatatAGCTGCCATGATTGTAGCAAATGTTTCAGCAATACTGCTAATCTGAGTGCGCACAGGAGGATTCATACAGGGGAGAAACCATATTGTTGTGATTATTGTGGCAAAGGATTTGCTCAGAATGGAAATCTTAAAATGCACATGAAGACACACAGGAAATAAATCTTATAGGCTAATTGCTGTATTTGTGAGAAATATCTCAGCACTGACATCCACCCAACTTGAGAATCCAAGAGAGAAATACATCTCTTTCGTGACTGTGGCAAAGCCTTTGCACAATGGAAATTTGGCAAGGCATAATGAGAATGTACAAAATGTATAACGTGTCAGAACTCAGCATGAACAACAAAATTTCAACAGTTTGATAACACTGGAGATAACTGTGATCTGGCTCATCTGACAGTGATTGAGGTTTCACACACAGTGGTGAGAGACTATACAAGTGTCCTATAGAAAATGCTTTATCACAAGTGTATTAACTAGGTGTCAAAGGAGCCTAGTTGAGGAAAAATTGTAGGCCTACATGCAATCCCTGCTTCAAGTTCTTCAAATGGACTCACTAGGAAGGCACATTCACAACAGGGAGAAAACATGTCAGGGCCTTCAGGGAAAGGGCATCAGACAGAGGATTGAGAAGCATATTCTCACTTCCACCAGTAAGAAGAGATGGGATCTAGTACATACCCACAAGAACCCAGCTCTTGGATCAACAAGATATGACTGTACTAGCTTGAACTTACAGAACATTGCTAGAAGTCCACATGAACATTGTGCAACAGATTGCTGAGCAGCAGGAGTCCCTGCTTATTAGTATGACACAGGACACACGTTTGAGCTGCTGTCCTGTGTCTTGAAAACAAAACTTTGCATTTTTTGTCTTGAAAGTAAAATGCCTTCTCCAGTAATACATCATATATGTTTTTAACACTGTTGTGATGTTGTTGTCTTACTTTTCAAAGTGTCCGTTACTTCATGGCTTTCATACCAAAACTATAGTCATACCTCTGAGTTTGATGTCAATTTGCCTGCAAAGAAAATAAATACTTGTCTATTTCATTGTATATGTATTGACAGGTATAAATACTTAGTATGCTATGTTCCAGGTGAACTATTAAATGTGCATGGGCTACCATCTGAAATGTGTGCTTCTTATTTCAACCAGAAACTTAAATATGataaaatatgaaaatgtatgatcATTTTTAGATCATACATTTTCCAGACATCCAGAACGTGGCACAGAATAAATAACAGATATGCTGTAATGGGAAATTATTTGGCTAATTCTTTCCCTGTGTTTGATTTACTGTTGATATGTAATAAACATAATTGTGTGGGAAGACACAGACAGATGCATTCCCTATGTTTAAGTCGCTTTGTGCCTGTTAGTATAAAATGATCTATTGTAACTAACTATTTATGATATTATTTTTGACCTGTTTAACTGCCAGTATGAAATGTCTGCAGGTGTTTAATGTTATGGTTAAAGTTTGACCCAAGACTGGATTTAAGGACACATTGATAATGTATCTGTGCCACTGTGATTCTGTAGCAGCTGATGTGACTTCCTTCAAGCCTctggctggtgtttacagaacattcgGTGCTTTGTGATTAATATATAAGGAGCGTTAGACATTTTCTATGCTTCTTCTGTAGGTGTTTCCCTCAATTGTTGTATTAAACCGGATTGATTTAGATTTGACTTCATCAACAACTGCACTCCTTTTTGTTCACCTGGACATTCCTGTTACATAATGTTAATTGATAACTCATAAGTCATAAATAGCTATCAGTTATTTATCTCATTTTCTGCTCCAATTAAATTGATCATAATTTTGACTTTTAATTTGAAATTCATACAATAAATTATACCGGAAGTTAGACCCAGCGGTCAGTTTCGTTCCACATCACATCCGCTGAGCAACAGCACAGCAGAAGTCAatttttgtgtttttgtatttctgagCACAGCAGTGCAGTAAACACTTTCAACAACTCCTACATCTTTCCTACATCGGCATCCGTTACTCTAATGAAATCTGGTGTCCCAAAGGGTGAGAACTGCCTTGTAGACATGGACTCCAAGGCAGGGGATCTCTTCAGCGCTGAGCCAGCCGACGCTGCTGGATCGGGAGGTGTCATGGGAAGGCTGTGGCTGCCCAAAGGCCTCTCGCCCAGTGTGGCCAAGGAGTGGTTTGATCGTCGCCGTGCGTCCATCCGTCCCTGGGCTGGCTTCGTGGATCACAGGAAGTTCACCAAGCCCCGCAACTTTGGTGAACTGTGCCAGAGGGTGGTGCGCAACTTTGACACCTACAACAGCAACTACACCTTCATCTTCCTCGGCCTCATCCTCTACTGCATTATCAGCTCTCCCATGCTGCTGATTGCTTTGGCAGTGTTTGTTGGTGCCTTCTACATCATCCACCTCAAGTCCCTGGAGTCTAAACTGGTCGTCTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279822 lncRNA downstream 8721 30518427 ~ 30576217 (-) False G245127
TU279912 lncRNA upstream 26810 30617895 ~ 30619600 (-) True G245204
TU279937 lncRNA upstream 51269 30642354 ~ 30652907 (-) True G245219
TU279889 lncRNA upstream 74118 30665203 ~ 30667510 (-) False G245188
TU279890 lncRNA upstream 74118 30665203 ~ 30667510 (-) False G245188
TU279891 lncRNA upstream 74118 30665203 ~ 30667510 (-) True G245188
XM_021595639.2 mRNA downstream 223168 30343960 ~ 30361770 (-) False LOC110517711
XM_021595643.2 mRNA downstream 223168 30343960 ~ 30361770 (-) False LOC110517711
XM_021595649.2 mRNA downstream 223168 30345809 ~ 30361770 (-) True LOC110517711
XM_021595606.2 mRNA downstream 248766 30323757 ~ 30336172 (-) True LOC110517657
XM_021595611.2 mRNA downstream 280385 30298757 ~ 30304553 (-) True smpdl3b
XR_005042958.1 mRNA upstream 1018 30592103 ~ 30593827 (-) True LOC118951153
XM_021595716.2 mRNA upstream 15879 30606964 ~ 30611799 (-) True LOC110517847
XM_021595792.2 mRNA upstream 106722 30697807 ~ 30710194 (-) False gnb3a
XM_021595782.2 mRNA upstream 106722 30697807 ~ 30710196 (-) True gnb3a
XM_021595796.2 mRNA upstream 122821 30713906 ~ 30725406 (-) True p3h3
TU279011 other downstream 367349 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 367826 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 385168 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 407530 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 455724 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 353868 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 971460 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2828344 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3766190 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 4298421 34889506 ~ 34889954 (-) True G249978

Expression Profile