RNA id: XM_021595732.2


Basic Information

Item Value
RNA id XM_021595732.2
length 5073
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110517885
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30627852 ~ 30667510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgcaATTTGGCAGGGAGCTAGAATtggagctgagaggagagaggacgcagTGTGGGCGGGTTAAGAAACACGGAGAGGGAGGGGACGTCAGCGTTATATTCCCATCGTTTTTACCCCTTCATACGACGTCTGCCGAAAACAAGGACATCGGTATTGAGATTCTATCCGTTCGTATCACTGTCTTGCGTCAAACTGAGGCGTACACATTTGAGCATCTTCAAGAGATCTGTGTATGAAATCCCGATACCTGCGCTTTAGTTTTTTTTGCGTCGGAGGATAGCTGAGCTGCAAAAGCGCGGATGCTACGAGGGTAGCGTTGGGTACCAAAACACCTCACTCACCACGaTGGACAGAATGagttgtctctccttcctcctcctttgCTTGACTTCGGTTGCCAATGGCAACAAAGCCAATAAGCACAAGCCATGGATCGAGACGGAGTACCAGGGTATTGTCATGGAGAACGACAATACCGTTCTTCTCAACCCACCACTGTTCGCCCTGGATAAAGACGCTCCACTGCACTACGCAGgtgAGATCTGTGGCTTCCGGGTGCACAATGGGCCCTCGGGATCCAGTTCGGTCCAGTTTGAGGCGGTGGTTCTGGACCGCTCGACAGGGGAGGGCCTGGTCCGCTCTAAAGAGCCATTGGACTGTGAGAGCCAGCGGGAGCACAGCTTCACCATCCAGGCCTATGACTGTGGAGAGGGCCCCGATGGAGCCAACAGCAAGAAGTCCCACAAggCCACGGTGCATGTACGTGTGAACGACGTAAACGAGTTCTCCCCAGTGTTCGTGGAGCGTCGCTACGAGGCCTCAGTCCCAGAAGGCCGTCTGTTCGACCACATCGTGCGCGTTGAGGCCCTCGACGCAGACTGCTCCCCGCAGTACAGCCAGATCTGCTTCTACGACATCATCACCCCCAACGTTCCCTTTGTCATCGATAACGATGGTAACATTAAGAACACAGAGCCATTGGATTCGAAGCGCCAGCGTGTCCACACCTTCTGGGTGACCGCGTTCGACTGTGGCAAGAACCGAGCTCAGGCCGACGCCCAGGTCGTCGTCACGGTCAAACCGTCCTGCAAACCCGGCTGGATCGGCTGGTCGAAGCGGGTGGAGTATACCCCCGGGTCAGGCAGCATTCCCCTGTTCCCCAGTTTGCACCTGGAGACCTGCGAAGAGACTGTGTGGAACATCCAGGCCACCGTAGAGCTGCAGACTGGCCATATTGGGAAGGGCTGTGACAGGGACAGCTACTCAGACCGATCAGTGCGCAGACTCTGTGGTGCTGTGAGAGGTGAAGTGGACTTACTCCCGCCCCCGTCCCCAGCAGCCAATTGGACCTCAGCCTTGCCCACCCTCCCTTCTTCTGATTCATCCCTGGTGTTCTCCTTCAATGGCTCCACCCATGTTGCCATGGTACCCGACTCTATTGCCGCGGCCGTATCCGGAGACCATTTCACCCTCCAGCTGTGGATGAGAAGGGGTGGAATCAACACCCAGCCTCCGACTAATCAGGCCAGAGGAAACCGCAGGGAGGAGGAGACTATCGTCTGCAGTACCGTCAAGAATGGTCAGTCAAATGaCGACTCCTTCTCCCACTACTCTCTCTCCGTTCACGGCTGCCGTCTATCTCTTTTCTACTGGCCCGATGTCTCCGCTGCGCGGCCCGTAAAATTCCTCTGGAAACTGGAGCAGGTGTGTGACAGCGAATGGCATCACCTGTCCCTCAGTGTCCAGTTCCCCTCTGTGACACTGTACGTGGACGGAGTCACCTTCGACCCCGCCCTCATCCACGACAACGGAGCCATACCCAACCCTGCCCCACGACAGCGACTGGTCATTGGCGCCTGCTGGGAGACAGAAGATAAACAGAAGGACATCCTTAACAACACCATCCCTGAGGGGAAAGACACAGGGAAGTATGTGGGTGGTTACCGTGGCTTGTTGTCAGGAGTAACGGTGCGGCCAGGGAGTGTGGAGCCTCACAGTGTGGTGGAGTGTCTGTACGCCTGCAGGGAGGGGCTGGACTTTGGGGACCTGGAGACCTTGGGCTCAGGCATGAAGGTGCATGTGAACCCCAGTCAGTCTGTGCTGGTTCTAGAGGGTGATGACATTGAGAGCTTCAACAGGGCCGTGCAACAGGTCACCTACAGGAACTCTCTCCGCTTCGCCACCCCTGGAGTCAGGCCACTCAAACTGACCACCTcactcagGTGTTTCAATGAGGAGAGTTGTCTTACGCTCAGGCAGTTGGAGGGCTACCTGGTGGTCCTTCAGCCCGATGCCCCTCAGATCTCCCTGTCTGGGGTCGGCCCCCACCTGGCCCGCCCCGCGCCTGAATTTGAGGGCCCCCGTGGTGTACCCCTCTTCCCGGAGCTGAGGATCGTGTGCTCCCTGTCTCATGCTGTTAACACAGCCGCTCAGGgcatggagggaggagCTCTGATGTCAGACGCCGTGGCCCACACTCTGGACGGCTGTGAGGTCCAGCCCCTGGGGGAGGAGCTAAACCCAGAGAGGGAGGAGCTCCTGGTGGACATGGATGCCCTGAGAGAGAGGGGTCTGGAGATAATCAACACCACTGCTTACATCGCCATCACAGgagCTGAGTCCATCTCCGTGTATGAGGATGTCCTTCGGTCCGTCCGTTACCGGCTGGCTAAAGGCTCGGCCCGCTTTGAGAGGCGGTTCCGTCTGTCCTGCTCCGAGATGAATGGCAGATACACCAGCAACGAGCTCACACTGGAGGTGAACTTCCTGCACTCCCTGGATAGTCTGTACCACCCGTCTCACCTCCTGGCCTCCCAGCAGCAGTTTCTTCACCCATCTCACCACTCTGGGGAGCTGAGTGGACACACCCTGCCTAACCCCCACCGCAACTCGGTGGTGCCAGGAGCGGCCACAGTCATCATCATGGTGTGCGTGGGCTTCCTGGTTGTCATGGTGATCCTGGGAGTGTTTCGAATCCGCTCCATCCACCGCCGTGGCGAGGGCACCGGGGGAGGGTCTAAGGAGGATAGCGGCCAATGGGATGACTCTGCCCTCACCATCATCGTCAACCCCATGGAGTCCTATGAGTCTCGTATGGGCATCTCAGCTGACACCGaaggtgagggggaggaggacgaggaagtGGTGGAGTCACCCGATGACGCCAACGACGACCAGCGAATCATCATCAAGAAAGAGGGCAGAGACGGCAACCCCCGTCGCTACTAAGCcaatcgtctctctctctctggaagcaCTCATTTCCATGGAAACCACAAAACGGCTCGCCACTCACCTCAAAGCGTTTAAATATCGAAAACTGCTGACACCTCTAGTCTATGGAATGTAACAGTACAATAACGCACACTGTATTTCcgcaacaccacaacaccattaGTGGTCTATAGCCAATAACAGGGCATTGAATCTTTCACCACGTAAATGTTCTACggcacaatatatacagtatactctaACCGCCTGaccaaaacaaccaacaaaaatTGTATGTGGTGCACTAATTCCTAACTCACAGGGAATTGACATTGTCCTGGAAGTCTGTGTGAGACAGGCTGGACCGAGGCTACATAACTTAGTTGTGAAGTTAGGATTGTATATGTTTTACTATCTCTATATCACACTTCAGAGACCTTTGCCCACCACACAAAATGAATATTGAAGCAATCGATTCACACAAAGCCTTGTGTAGGCTCTTCACATATAGACACAAACCCTGATCCTGACGCTATCCCACACACCTCTAGATTTAATCTAGTTGTCTTTTTGCtgcacaatctctctctctcgctctttctctctctatacattCCTCAACTTCCAaaaatatgcccccccccccctcagatctGACTCCAGCTCAGTTCCACATTCATAGTAACCTTAATATGGAAAAACATACAATTATAGGGTTCTAGCTGATTTTTACACACTATGTACGATGTGCTTCACAATACTGTATGTGATGTGCTAAATTAGATCAAATAAATTGTCCACGCAAAAGCGTACATTTTCAGAACTTTCCTTTTGTCAGGGTAGACTTTTAAACGTTAAATCGTATTGCTTGGTAGAACCCTTTCATTGTAAGGTTTTGCAAGACAACCAAACAGGCTGATGATAAGGGCATAGAGTAACCTCTGACCCTCACCACAACCCCAGTGACTCGACTGAgcgccccccccccacccacacacacacaccattgcacACTCACCACCCACCGCTCTCGTAACAATCTCACGACAAAGACACACCCGCGCCACAACACCTGCTGTATCCAGAATGTCAGCTCAGCTTGGGCAGTTTTGATTGTATTACATTTTCTGTACATacaattattgttattattattattattgcagtCAACGCTTGCTCTCTGTCTGTACTCTTAAAGAGGGAGCTGCATATACATATTATTTATTACCAATTACACTGTTTTATCATTTGACCAGCTGTTGTATATTTTTAAGGTTACACCATCAGAATACGgagtactaataataataataataatagtagtagtagtaataaggATGATGATTCCTGACTTGATGAGTGTATACATTCGTGTGTTGAATTGTTGTAATTTAAAATCGTGTTCATATCTGAATCACAGTAAATGGAGGGAACATTGGTAAATAGCTActctgtcacctctctctctcattccttcctTCTTTCACACCTTAGAATATTCTCAAATCGTTCTCTCTTCCCCAGCTCCACTTTCCCTCTTGTCTTTTTGTTTTCGTGCCAGTCCCCACCATCTCTTTGGTCCACCTCCCTACACCCCTCCCTCACTTCCCCCCTCTGTGTttattgctgtctgtctgtgtgtcaatGTGCAGTGATAAACCTGTCAGTAAATAAAGCCTGTTGTTTTTCAGTGTAATATTATGGAAAACAAATTGCATTAATTActtatattattactattgggACATTAACTTTAATTATTGATACAATGACAACATGGATTATGAAGATTATTGTTATTGATAACTGTCTGAAAACATTTAAAAGTTCATAATAAAACACTCTGATGAGGTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279298 lncRNA upstream 18082 30606965 ~ 30609770 (+) True G244648
TU279359 lncRNA upstream 53365 30573578 ~ 30574487 (+) True G244707
TU279318 lncRNA upstream 113558 30514066 ~ 30514294 (+) True G244668
TU279310 lncRNA upstream 122390 30505059 ~ 30505462 (+) True G244660
TU279308 lncRNA upstream 123564 30504046 ~ 30504288 (+) True G244658
TU279426 lncRNA downstream 30391 30697901 ~ 30698160 (+) True G244768
TU279407 lncRNA downstream 38545 30706055 ~ 30710103 (+) True G244751
TU279438 lncRNA downstream 44436 30711946 ~ 30712251 (+) True G244779
TU279443 lncRNA downstream 53020 30720530 ~ 30796272 (+) True G244783
TU279508 lncRNA downstream 150198 30817708 ~ 30824094 (+) True G244831
XM_021595725.2 mRNA upstream 773 30615198 ~ 30627079 (+) True LOC110517876
XR_005051413.1 mRNA upstream 15405 30612392 ~ 30612447 (+) True LOC118964363
XM_036973802.1 mRNA upstream 51644 30548571 ~ 30576208 (+) False LOC110517766
XM_036973798.1 mRNA upstream 51644 30548585 ~ 30576208 (+) True LOC110517766
XM_036973797.1 mRNA upstream 215546 30375575 ~ 30412306 (+) True LOC110504017
XM_021595758.2 mRNA downstream 385 30667895 ~ 30683839 (+) False pex5
XM_021595757.2 mRNA downstream 410 30667920 ~ 30683839 (+) False pex5
XM_036973808.1 mRNA downstream 426 30667936 ~ 30683839 (+) False pex5
XM_021595752.2 mRNA downstream 428 30667938 ~ 30683839 (+) False pex5
XM_036973809.1 mRNA downstream 435 30667945 ~ 30683839 (+) False pex5
TU278893 other upstream 490288 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 937056 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1593138 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2878126 27747347 ~ 27749726 (+) False LOC110516993
TU275655 other upstream 2904058 27715043 ~ 27723794 (+) True LOC110516984
TU279535 other downstream 198056 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 250521 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 277228 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 369007 31036517 ~ 31037252 (+) True G244956
TU279677 other downstream 419259 31086769 ~ 31087255 (+) True G244991

Expression Profile