Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028848 |
| length | 981 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 6 |
| gene id | XLOC_014593 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 10537443 ~ 10554352 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005212 | structural constituent of eye lens | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-104 | Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2). |
| ensembl_id | ENSDART00000104539 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00028835 | lncRNA | downstream | 222810 | 10313927 ~ 10318962 (-) | True | XLOC_014586 |
| TCONS_00029757 | lncRNA | downstream | 634833 | 9904324 ~ 9906939 (-) | True | XLOC_014578 |
| TCONS_00028805 | lncRNA | downstream | 858264 | 9676517 ~ 9683508 (-) | True | XLOC_014572 |
| TCONS_00030166 | lncRNA | downstream | 932260 | 9594867 ~ 9609512 (-) | False | XLOC_014570 |
| TCONS_00028866 | lncRNA | upstream | 304882 | 10859122 ~ 10860449 (-) | False | XLOC_014603 |
| TCONS_00028865 | lncRNA | upstream | 304954 | 10859194 ~ 10864799 (-) | False | XLOC_014603 |
| TCONS_00028870 | lncRNA | upstream | 321493 | 10875733 ~ 10876830 (-) | False | XLOC_014603 |
| TCONS_00030168 | lncRNA | upstream | 665521 | 11219761 ~ 11227568 (-) | True | XLOC_014612 |
| TCONS_00028909 | lncRNA | upstream | 1580551 | 12134791 ~ 12138739 (-) | False | XLOC_014624 |
| TCONS_00028845 | mRNA | downstream | 63543 | 10454305 ~ 10478229 (-) | True | XLOC_014592 |
| TCONS_00028844 | mRNA | downstream | 109638 | 10429810 ~ 10432134 (-) | True | XLOC_014591 |
| TCONS_00028843 | mRNA | downstream | 116632 | 10415484 ~ 10425140 (-) | True | XLOC_014590 |
| TCONS_00028842 | mRNA | downstream | 146089 | 10379248 ~ 10395683 (-) | True | XLOC_014589 |
| TCONS_00028841 | mRNA | downstream | 146841 | 10375782 ~ 10394931 (-) | False | XLOC_014589 |
| TCONS_00028850 | mRNA | upstream | 57548 | 10611788 ~ 10612774 (-) | True | XLOC_014594 |
| TCONS_00028851 | mRNA | upstream | 70404 | 10624644 ~ 10627752 (-) | True | XLOC_014595 |
| TCONS_00028852 | mRNA | upstream | 76439 | 10630679 ~ 10631482 (-) | True | XLOC_014596 |
| TCONS_00028854 | mRNA | upstream | 82284 | 10636524 ~ 10648523 (-) | False | XLOC_014597 |
| TCONS_00028855 | mRNA | upstream | 82449 | 10636689 ~ 10646808 (-) | True | XLOC_014597 |
| TCONS_00028825 | other | downstream | 299661 | 10238453 ~ 10242111 (-) | True | XLOC_014584 |
| TCONS_00028819 | other | downstream | 418425 | 10123233 ~ 10123347 (-) | True | XLOC_014581 |
| TCONS_00028818 | other | downstream | 529158 | 10012498 ~ 10012614 (-) | True | XLOC_014580 |
| TCONS_00028791 | other | downstream | 1689117 | 8852540 ~ 8852655 (-) | True | XLOC_014556 |
| TCONS_00028774 | other | downstream | 2716239 | 7825395 ~ 7825533 (-) | True | XLOC_014543 |
| TCONS_00028853 | other | upstream | 82129 | 10636369 ~ 10646822 (-) | False | XLOC_014597 |
| TCONS_00028860 | other | upstream | 137926 | 10692166 ~ 10730478 (-) | False | XLOC_014599 |
| TCONS_00028862 | other | upstream | 151219 | 10705459 ~ 10705475 (-) | True | XLOC_014600 |
| TCONS_00028867 | other | upstream | 304977 | 10859217 ~ 10860466 (-) | False | XLOC_014603 |
| TCONS_00028885 | other | upstream | 639009 | 11193249 ~ 11193363 (-) | True | XLOC_014611 |
