RNA id: XM_021581502.2


Basic Information

Item Value
RNA id XM_021581502.2
length 1868
RNA type mRNA
GC content 0.45
exon number 9
gene id cd4-2.2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30743021 ~ 30749644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttttatttcgtGGGAAATGttgaagggagaggggaaggataATCAACTTTTACCGGTTGAATTTAGACACAAATATAATTTTTAAAATGATATTACGTTTCTCCAGAAATATGTTttacaattatgcaaattaggcagTATTTCATATTTGCATATTGCGCAGATCCATTTTTCTGGACGAAACCAGCCTAAATATTTTGGAGTCATTTTGTATAGACACTCCCGGACCGGACTAAAATGTGATTAACGCAGATGCTTCTTAGTTGGGGTGTGGGAAGAGTCTGACTTAGACTACCAAACGCCTATTTAGACCGAATCACCATCTCTTCAAAATTTCAGATAAAAGGTCCAATATGAAGACTCTCTCCTGGTTTGTGTTCGccctgtGTATTCTCCATGTGGTGGGTGAGGTGATCTACAAGAGAATTGGTCTGCCTGTTAATATTGATTGTGGAGTCAAGACGTCTAACAAGGATATGGAGTGGAGTCATAAAGCTGTGGGTGGAAGTAAATCTGTGCTCATCGTGGATTATTTTGGGAAGAATGGCAAAGAGCGGAAAGGAAATGCTCCCATGGTTGAAAGGGCGAAAGTGAGACGGGACCGGCTGGAAATCTCTGCTCTAAATGATGGTGACGCCGGACTTTACATCTGTAAGGTGGACGGGAAAGATATGGATCACAGACTCGACATTGTCACAGTCAAGGTCCACCCCTCCAATGAACTCAACGAAGGCAACAATGCTATCCTCGAGTGCCAGGTGACAGGAGTGGATCCCTTGCCCAGTGTGGAGTGGGTTAGTCCAGGTGGAAAGGTGGAAGGGGCCCCTGGACGACCTGGCTCTAGGAATGTCTCTTTCAGCTCTGTGGCCCTGTCAGACACAGGAGAATGGACATGTCAGATTACTCAGGATGAGAAGACACACAAAGAGACTCAGACCATCAACGTGAGAAGTTTGTTGCCGAATGACGGCCAATATGATGGGCAGGGGCACAGTGGACCTAACTCTGATGTACACACAGTGACTACTTGCCATCACTGTACCAAAGGCAGCCAGCAGCCCGTTGAGTGGGTGCCCATGCTGGGCTTAAGCCTGTGGGTGTGGGTGGCAGTGGGAGCAGGATGCCTGGTGGGGGTCTTACTCCTGGTGACCATTGTTCTCCTGCACCGCAGGAACAAAATAATGAAGAGAAGAGACCGGAAGATGAAGAACATCAGAGTGCCCCTGAAGTCCAACGACTACTGCCAGTGTAACCGCACACTAGAGGGTCCACCccggaggacacagagagagaagcctTCGGCTGGACCACGGCAACAGCGCTGATGGAGCGGAGTATTATGGGCTGGAACGTGATTGCTTGAAGACACAGGGTGGATGGAAGAATGATcgagagagagaatatacagTTTGTGAGatacaagggagagagagagaaagagagggggggggggatcttgtAAATGGGCTTAtgtccatttaaaaaatatgaatgaTGAAATGATATGAACTGAAAATCACATGTTGAAGGAAGAAACAAACACTGTTATTCTTACCTATATGTTATTGAATGTCATCTGACGTCTTTTCCGCATTGTCAGAGCATCCTCTACTGCATTGCATCTTTGTGCTTAGGTCATTTTCAATGACCATTCATTTTCACACAAAGCCTGAGACTTACACTGTACGGTTTTAGAATGATTTTGCAATGATTCCTGCTGTGATATTGTTCAGCGTGGCATATTTACAGACGTTACAATTTTGTCAACTTTCATGGCTACTTTTTTAAAATACCCGCTTGTTATGTTATGAATTGAAATACCTGTCAAATTAAAGTGTTTTCTTGTTGAAAGGAATACAGATCATa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279438 lncRNA upstream 31046 30711946 ~ 30712251 (+) True G244779
TU279407 lncRNA upstream 33194 30706055 ~ 30710103 (+) True G244751
TU279426 lncRNA upstream 45137 30697901 ~ 30698160 (+) True G244768
TU279298 lncRNA upstream 133527 30606965 ~ 30609770 (+) True G244648
TU279359 lncRNA upstream 168810 30573578 ~ 30574487 (+) True G244707
TU279508 lncRNA downstream 68064 30817708 ~ 30824094 (+) True G244831
TU279517 lncRNA downstream 90621 30840265 ~ 30844031 (+) True G244838
TU279522 lncRNA downstream 99551 30849195 ~ 30849811 (+) True LOC118944663
TU279504 lncRNA downstream 154963 30904607 ~ 30907005 (+) True LOC110518221
TU279560 lncRNA downstream 175882 30925526 ~ 30926079 (+) True G244875
XM_036973810.1 mRNA upstream 1006 30726006 ~ 30742291 (+) False LOC110518030
XM_036973811.1 mRNA upstream 1006 30726006 ~ 30742291 (+) False LOC110518030
XM_036973812.1 mRNA upstream 1006 30726006 ~ 30742291 (+) True LOC110518030
XM_021595774.2 mRNA upstream 46090 30685494 ~ 30697207 (+) False LOC110517966
XM_021581485.2 mRNA downstream 1743 30751387 ~ 30774955 (+) False cd4-1
XM_021581480.2 mRNA downstream 19295 30768939 ~ 30774955 (+) False cd4-1
XM_021581488.2 mRNA downstream 19526 30769170 ~ 30774955 (+) False cd4-1
NM_001124539.1 mRNA downstream 20292 30769936 ~ 30774401 (+) True cd4-1
NM_001124633.1 mRNA downstream 32302 30781946 ~ 30785741 (+) True cd209
TU279342 other upstream 110764 30631770 ~ 30632533 (+) True G244691
TU278893 other upstream 605733 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 1052501 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1708583 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 2993571 27747347 ~ 27749726 (+) False LOC110516993
TU279535 other downstream 115922 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 168387 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 195094 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 286873 31036517 ~ 31037252 (+) True G244956
TU279677 other downstream 337125 31086769 ~ 31087255 (+) True G244991

Expression Profile