RNA id: XM_021581485.2


Basic Information

Item Value
RNA id XM_021581485.2
length 2301
RNA type mRNA
GC content 0.49
exon number 11
gene id cd4-1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30751387 ~ 30774955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTGCAGTCTAgcttcctgtctccctgtgtgtaacagtgtgtacAGTCTGAGTGATGTCAGACCTGATCTCATCTCTGCACCGGGAGCATCAGACTGACCAATCAGCAGTGAGGGAGGTGCAACGGGGTTTAAAAGGAAATTTGTTTCTCTGAAAATCAACATTTCCGCCTGGTTCTTGATCATTGGCGAGGGACTCTCAATGCTATCCACCAAACGAGAAAGTACAAAATGAAGTGTGTTTCTGGATTCCTTTCAATCATTATTGCATTGTTCATCTCCTCAACAGGGGCTGAAGATGTGGTTGTGTATGGTCAGGTGGGAGAGACGGTCACACTCCCCAGATCAAAGTGGGGTTCAGAAAGGGTGTTGGTACAATGGTTCTTTGGAATAGACACACAACCTTTGATATCCCGCAACTCCCATGGTCGAGAGACGATAGATCCAGAGTGGAAAGACAGGCTGTCTCTGTCCAAGACGGACTTCTCCCTGATTATCAACAATATCAGACTGGAGGACTTCAAATCCTTCAAATGTGAATTGAAAGATTTCATGCCACAAACAAGTACCTCAGTCACATTCAGACTGTTCCGTGtgagTGTACAGCCAGTATCTCCCCTGTTGGCTGGGAAGAATCTTAATCTAAAGTGTGACATAGAGGAAATATTTAAGGGGACACAAAGAAGATGGCTTAGTCCCCAGAAACAGGACCTGAATGAGGACAAGCGTGCCCAGATCAGAAATGACGGCAGCCTGACAGTAATGAGTGTCACTGACCAAGACCATGGAGAGTGGACCTGTGTGGTGACATACCAGGGCAGGGAAGCCTATGCCAACACTCATGTTACTGTAATAGACCTCTCCCCTGCTCATCCACAGCCTATCTAcacctctgtctcctccctctctcttctccatctgcCATGTTTCTTTTCCATTCCTCCTCCACTATCCTGGTCAGACAGCCAGGAGAAGAGCATCCAGGGAGGCCGCTGGACCTTTACCCCAAGCCCAGCGGCAGGCTCCCTCACTGGGGTCGTCCAGACCCTCGCCAACCTCTCCCTGGGGCCTCCATTAGCCTGGGTGGTCAATCAGAAGAGAGAGCTGGATGTCTCCGCCCTGCAGAGGACAAATCTAAACCTCTCCCTGTCAAAGAAAGGGGTGACGGAGGGGGACAGGGGCGAGTACACCTGCGCTGTGGAATTCCAGAGGGGGGACACCCTGAAGAGAAGTATGCGTGTGGAGGTGCTACAGGttTTTTCCTCTCCAGCTCCAGTGGCCTTTGTAGGTCAGGAGGTCAACCTCACCTGCACCCTGGGCCaccctctgacctctgacctgaaaGTGAAATGGATCCCACCACGCCAATCCTCCCTCCTCGTGTTAGGCTCCGCCCCCGACTCCGCCCATCTCACCATACCGGAAGCGAGGGATATAAATGGTGGGAGGTGGAGGTGTGAATTGTGGAGGAACAAAACCAAGCTGACGTCAGTGGAGATCACACTGAAGATCGAGCGAGTCCCCATGGACGTGTGGCTGTTGGTCACCATCTGTGGCGCAGCCGTCATATtcgtcctcctcctcatcctcactgTCATTCTCAACCGACGCCACAGACAGCGGGTGACGATGCCCAGACGTGGCAAACGCAGAATCTGCCGCTGCAAAGACCCCCAACCAAAAGGATTCTACAGAAACTAGAGACATCATACAGACCGGAATCCCTGTCAATGGACAATGTCTCTACTATTTTGTCTTAGCTATTCTATTCTGACACAAAGAAACACCAAAAGAACAAGAAAGAAGATGTTTTCATGTAATGTTTGATAATAGATTTCACAAGTGTATATTATCATACTTTATGACCTATGATTGAGCTACAATTGAacaaatactgtatataaatatgtatagCTACTGTCgctttttaattgtttttttttactgtacactgagtttacaaaacattaagaccacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatgatcccccttattgatgtcactttccaaatccacttccatcagtgtagacgaaggggaggagacgggttaaagaagccttgagacaattgagacgtggcCGAAAGGGCAAGACAGAAAATGCAAGTGCTTTTGAACCGGGTATGGTCGTAGGTGCAAggctcaccggtttgtgtcaagaactgcaacgctgctgggttttccacgctcaacaatttcctgtgtgtatcgcagtggaggctcctcagaggaccAAAATAGAAAATGGTGAAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279438 lncRNA upstream 39136 30711946 ~ 30712251 (+) True G244779
TU279407 lncRNA upstream 41284 30706055 ~ 30710103 (+) True G244751
TU279426 lncRNA upstream 53227 30697901 ~ 30698160 (+) True G244768
TU279298 lncRNA upstream 141617 30606965 ~ 30609770 (+) True G244648
TU279359 lncRNA upstream 176900 30573578 ~ 30574487 (+) True G244707
TU279508 lncRNA downstream 42753 30817708 ~ 30824094 (+) True G244831
TU279517 lncRNA downstream 65310 30840265 ~ 30844031 (+) True G244838
TU279522 lncRNA downstream 74240 30849195 ~ 30849811 (+) True LOC118944663
TU279504 lncRNA downstream 129652 30904607 ~ 30907005 (+) True LOC110518221
TU279560 lncRNA downstream 150571 30925526 ~ 30926079 (+) True G244875
XM_021581518.2 mRNA upstream 1743 30743021 ~ 30749644 (+) False cd4-2.2
XM_021581510.2 mRNA upstream 1743 30743295 ~ 30749644 (+) False cd4-2.2
XM_021581502.2 mRNA upstream 1743 30743297 ~ 30749644 (+) True cd4-2.2
NM_001124540.1 mRNA upstream 2249 30743144 ~ 30749138 (+) False cd4-2.2
XM_036973810.1 mRNA upstream 9096 30726006 ~ 30742291 (+) False LOC110518030
NM_001124633.1 mRNA downstream 6991 30781946 ~ 30785741 (+) True cd209
XM_021595817.2 mRNA downstream 12225 30787180 ~ 30798358 (+) False LOC110518073
XM_021595822.2 mRNA downstream 12253 30787208 ~ 30798358 (+) True LOC110518073
LOC118944663 mRNA downstream 65701 30840656 ~ 30860491 (+) False LOC118944663
XM_036973816.1 mRNA downstream 107147 30882102 ~ 30897117 (+) False LOC110518162
TU279342 other upstream 118854 30631770 ~ 30632533 (+) True G244691
TU278893 other upstream 613823 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 1060591 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1716673 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 3001661 27747347 ~ 27749726 (+) False LOC110516993
TU279535 other downstream 90611 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 143076 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 169783 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 261562 31036517 ~ 31037252 (+) True G244956
TU279677 other downstream 311814 31086769 ~ 31087255 (+) True G244991

Expression Profile