RNA id: LOC118944663


Basic Information

Item Value
RNA id LOC118944663
length 1265
RNA type mRNA
GC content 0.55
exon number 10
gene id LOC118944663
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30840656 ~ 30860491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGATcagatgatggagagaatggaccgatgggagaggagtggtctcctctCTGCACCTCCGGTTCCTCCGACGagtccaccttctcctccctcctccctttcctacCTGACGGTTCGTGCCCTGGAGTGGGACAACGCGGTCTGGAATGGTCCAGACTCGGCGAAGGAGCACTACCCAGAATTCACCCGCAGCTTTCGTGCCGTATTTGACCACCCTCCAGAGGGCCGAGAGGCGGGTGCACCCCTTAGTGATTTTGAGCTAATGCCCTCCATGATACAGAGGCTGACCCTGCTGGAGAACAAGGTAAAGACCCAAGCCCTGGACGTTGACCACAAGGGGAGCCAAATGAACTTTGACCTGGTGCTCCAGAACATTCAGCAGTAGAACAtactggctggggagagagagtccTTCGTCAGGGTCACGTCCAGAGGGGCACAGCTGGCCCAGCAGCACCTCCTTCCACTAAGGCTCTACAGCAATGGCATCCTCATGTTCAATGGGCCCTTCCGCTCTTACCAGGAAGCCAgcacacagCAGTGCATGCAAGACCTGATGCACGGATACTTCCCTTCTGACCTACAGGACAGGTTTGCAGGTGGGGTGCCCTttcggGTTCacgacaggtgagaggaggagttcCAAGAGAGGCGACCGTGGGCTGAGTTCCCTGGGATGGGGCAGGCTGTTTTGGTTCAACTATATGCATGCCACTTGAGATTCACCCCAAGACTATTTTGCTCTGACTTGAACATTGAgttagccacaggcagaacactGACAATGGACCAATTGCTGAACAGGCTGCCCAAAGTGTTGGTGAAGGCTGGTAGAGTGATTGACATCAGGGACTCAGTGAAAGCCAGTCTACAGGGCTCTTCTGATGCTCCAAACAGCCATGCGGTGACCCTCATAGACATACCAGTGCTACAGGCCTTGAAAGAGAGGTATGCAGGTTGGAGTTGCATgagactgacccccccccccccccccccccccccccaaaactcgGCCCGTGATGTCACCACACTGAGGGTAAAGTCAGAGGATGGCGAGCACACTTACATCATGAAGATGCACTTCTCAGAGACCATAGGTCACCTGCACCACTATCTGGACAAGCACAGagcaccttcttccacatCATATGACATCAGTGCGTTCCCACAGCGCTGGTACAGTGAGGACTGACACTCCTCTCCTGTGGGCTCACTCCCAATGCTGCTCTGCTGCTCAGGACTAGGCCAGGCCCACCTCAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279508 lncRNA upstream 16562 30817708 ~ 30824094 (+) True G244831
TU279443 lncRNA upstream 44384 30720530 ~ 30796272 (+) True G244783
TU279438 lncRNA upstream 128405 30711946 ~ 30712251 (+) True G244779
TU279407 lncRNA upstream 130553 30706055 ~ 30710103 (+) True G244751
TU279426 lncRNA upstream 142496 30697901 ~ 30698160 (+) True G244768
TU279504 lncRNA downstream 44116 30904607 ~ 30907005 (+) True LOC110518221
TU279560 lncRNA downstream 65035 30925526 ~ 30926079 (+) True G244875
TU279575 lncRNA downstream 94486 30954977 ~ 30955308 (+) True G244890
TU279581 lncRNA downstream 100847 30961338 ~ 30962556 (+) True G244896
TU279594 lncRNA downstream 114516 30975007 ~ 30975235 (+) True G244909
XM_021595817.2 mRNA upstream 42298 30787180 ~ 30798358 (+) False LOC110518073
XM_021595822.2 mRNA upstream 42298 30787208 ~ 30798358 (+) True LOC110518073
NM_001124633.1 mRNA upstream 54915 30781946 ~ 30785741 (+) True cd209
XM_021581485.2 mRNA upstream 65701 30751387 ~ 30774955 (+) False cd4-1
XM_036973816.1 mRNA downstream 21611 30882102 ~ 30897117 (+) False LOC110518162
XM_021595866.2 mRNA downstream 24316 30884807 ~ 30897117 (+) False LOC110518162
XM_021595872.2 mRNA downstream 24358 30884849 ~ 30897117 (+) False LOC110518162
XM_021595864.2 mRNA downstream 24359 30884850 ~ 30897117 (+) False LOC110518162
XM_036973815.1 mRNA downstream 24393 30884884 ~ 30897117 (+) True LOC110518162
TU279342 other upstream 208123 30631770 ~ 30632533 (+) True G244691
TU278893 other upstream 703092 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 1149860 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1805942 29031711 ~ 29034714 (+) True LOC110517275
TU275657 other upstream 3090930 27747347 ~ 27749726 (+) False LOC110516993
TU279535 other downstream 5075 30865566 ~ 30874608 (+) True G244851
TU279506 other downstream 57540 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 84247 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 176026 31036517 ~ 31037252 (+) True G244956
TU279677 other downstream 226278 31086769 ~ 31087255 (+) True G244991

Expression Profile