RNA id: XM_036973813.1


Basic Information

Item Value
RNA id XM_036973813.1
length 3896
RNA type mRNA
GC content 0.53
exon number 13
gene id LOC110518140
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30861014 ~ 30881486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGGTGTTGTTTGAGTCAAATCAGAGGCGGTTAGCTAGCTAAACTCTAGAACAGCAGCTCTGGCAAAGGAGAACGATTTCTTGAGAGCGACCGAAATTACACATGTGCTAATCTCGGCACACTCAAGCCGTTCATTTTCAAGTATTGCAGAAAAGGTATGTGTTTCAGCTGGGTTTCCTGACATGGAGTGGCAGACGCCAGCTGTGTCTGAGAAGTTCCAGAGCCGCTTTGGCCGACGGCCTGGGACAGCGGACAGTGGGGACACGGGGCTAGGCGTCACCCCATCTGACAGCACAGAAGATTTCTGCAGTTCCAGCAGCAGCCCCTCGTTCCAGCCCATCCGCAGCCAGATTCCCATCCCCACTGCCCATGTCATGCCTTCCACGGCCGGACCACCGGCCTCCAAGCCCCAGCCCTGTTCCCAAGAAGATACCCAGGCTTCTGCCGAGGCACACAGGCCCTCCTCGGGCTCCCGAACCTCCAGTGGAACCTCCAGCTCGAAGTCGTCCTCCCTCTCCAAATCAGCCTCTTCCCCCAACCTGGACATGGCACAAGAAGGCATGGGGGGAGCCGACCCCGCCGGACCCAAGCCAGACTGCTTGAGCCGCTACCGCAGCCTCGTGAATGGACTAGACCACTCTTTGTTCCCCTCGGGGGACCACTCTTGCATGGAAGAGGGCCAGAGGTTCGACATGCCTGCCATGGAGCCCACAATGAACCAATCTGCCCTGCTGGCGGGCTACTGCCCCGACGTCCGACTCAGGCTCCAGATGACCAGCCTGGGGGTGACTCCCGAGTGCAGCGGAGAAGCCTACAGGGGTGCCATGGAGCACTCGTACAAGGCTCTCCCCGAGACAAGGCCAGGGGTCCCCGGAGCTCCAGACCCCTACAGCCAGAGAAGCAGCCAGCCCGGTGGAACTGTGGCTGGGTCAGCAGGTGTGTACCCCAGCGCTCTATATCTGCAGACCCAGGCTCTGTTGAGGGAGGCCAAGGCCTATGAACCCATGCTGCAGGAGCGATGCAGCGAGCTGCTCAGctggcagcagcaacagcagcacaaGCAGCAGCTGGAGAGTCTCCGTGTGCAAGTGGAGCAGATGCAGatgatGACTGCTGGAGTGGGCCAGTACCCTGctctctactccaccccctccaTGCCACCAGAGACCAGGAAGTGGGAGGCGGCGATCAAAGCCAACGAGAgcattctgaaggagaaggagctCGTCATCGAGAGACAGAAGCAGCAGATGTCTCAGCTGGAGCAGCGGCTGCGGGAGAGCGAGCTGCAGGTCCACGGAGCCCTGCTCGGTCGCGGCGCTCCGTACGGCGATATGTGTCTGCTCCGGCTGCAGGAGGCTCAGAGGGAGAATGCCTTCCTGCGGGCCCAGTTTGCAGAGCGCAGTGACTGCGCCGCCCAGGAGAAGGCGGAGGCAGAGCGCCGCCTCGGTGCCGTGGAGGCGGAGACGCGGCGCCTGAACGATGCGCTGAGGGAGACCAGCGAGAGTCACGCCGAGGAGCTGAAGaagcaggaggagaggATTCGCAGCCGGGACAAGCACATCAACAGCCTGAAGAAGAAGTGCCAGAAGGAGGCAGAGCAGAACCGAGAGAAGCAGCAGCGCATCGAGACTCTGGAGCGCTACCTCGCTGACCTGCCCACTATGGAGGACTACCAGGGCCAGAGCAAACAGCTGTCGGAGACGGAGCAGCGGGCGTCCCAGCTGCAGGGCCGGGTCAGAGAGCTGGAGGTGTGTCTGGAGGAGGGTCGCTCACACACCCGGGAGAAGGACACCCAGCTGGAGGAGCAGAGACGCAGGGAGAGGGAGCTGCTCACCACtgtcaccagtTTACAAGAGCGGGTGCAGGAGGGCCTGGAGGACGGGGCAAGGTTACCCTCCCTGGATGTGGAAATACTCCGAGGGGAGAACAGCAGCCTGAGAGAAGAACAGCAGAGACTTAAAAAGGTCCTAGAGAAGCAGCTGAGGGTGATGGAGAAACTGGGCGCCCAGATCGTGACCCTGGAGGAGCAGGTGTCTCAGGAGGAGAGCAGCTCCCATGCTATGAGAGAGGAGGTTTGTTCTAAAGAGCAGGGGCTGCTCCAGCTCCGCACAGCCATGAAGGAGCTGTCGGCCCAGAACCAGGAACTAATGGAGCAGAACCTGACCCTCCATGAGCGTTTGGAGGACTTGGAGAGGGTGAACCTGGACAGGACGTCGTCCTCGCTGCGGCCGGCCGGGGCCCGCCTCACCCAGCGTCTCCACGGGGAGATGGCCTCGTGCCTCTGCGACCTGCGCTCCCTCTGCAACGTCCTGACCCAGCGGTCACAGGGCCGAGACCCCAACCTCTCGCTGCTGCTTGGCATTACATCTCCCCCGCCCATGGCAGAGCAGGTGGAGGATTGGCTGAGTCCTGAGGTCCTCCAGAGGAAGTTGACTGAAGCCCAGCAGCTGCGCCGTGACGTGGAAGAGCTCCGCACCACCGTCTCAGACCGCTACGCCCAGGACATGGGAGAGAACTGCATTACCCAGTAGCCCCAGCTGCTAGCCTGTCTctaaaacagactgaaacatCAGGCTAATTGGTTAAGGCTTCCATGTTGGGCTTGCTTCTTCCATGCTCCATTGAGTATGAAATGGAATCTCATGTTGGCCCATTGGGGACGGAATCCTTGATCAGGTCATGCATTTCAGTCAAAGGGCTTATGGTGAAAGAGCTGTTCTCAAAccagtgtgtttttttgtttttatcaaTGTTTTACTGATACATTTGTTTCTTTGTGTTGTCAGAGGCCCTCCCTTCTTTTTATGACACACATGGATGGGGTTGTTGTCTTTTTCAATAAATAACACTATTTTATTATTTAAATCTTCCCTCTGGGGAAATAATGTTGGATGTGGTTGACAATCAACTGAAAATATTTAAATCTGTTTTTGAGTGATTCAACAGGAAATGTTACTAAcccacattttattttatttaatggcGTATTTGTAGCATCTGACTCTGGCATGTGGGTGGCTTTTAACAGTGGTAGGGCTAATACTGAAAATACATTCTGTCAGCCTTATAACAGAGATACTGTTCAGAGACCTCTGTCCCGTCTGTAAATTATGATTTTATTTTAATGTTAGCAGATGTTTCTCTCAGGTAGTGGGCTTGCTTTGATGTTCAATTGTGCCTGTCTGTGCTTTTGTTGCCATCACCATGCAAGCCAATATACTCCCAGGCAAATTTGCTAGTGGCTTTCTTTCAACTATACTTTATTTTTGGTGTTTCAGCTGACAGAGCAACTCAATACATTCCTTAAACATTGCTTCATGGGTTGTCCTCGAAGAAGATATGTCAAAGCTAGTTATGGGGGATAACGGTCTGACGATGTGGACGGAAGCCATTTTTACACACTCCTCAACAGTATTTGTGGGACTGGTTGTTATGGGTCTGTTTACTCTTGCAGAGCAACATACTGTAATCTAACAGGTGAGTCCCTGTGCCTACTTTGTCCTGATACACTGTTCACTTTGGTGCCCCCATCTGCACTAGCAAAATGCTATCTAATAGCAAGAAATGTTTGGTTTCAAATGAATAACATAACTAATGGTTGTCAGAATTTTGTCATCAAAAAAACGTGACATGACTGACCACTAACTTTATTCTAGTTTGTTTCAGTGGTCGAAGAGCAAAAAGAGTTCATTTATTGCTGGAATGTCATGTCAAATGCTTTCCTTCAGTTGACGAACATCATGACACTAACTTGGGACAGACTTGTCTAGATGAGACTGAGTTCTCATTTGAGCTTGAACAAAGTTAGACAACTTGCCTTATGTCATACTTTTATATTGAATTTATCCTTAATTGTATTTACACTGAAATAAAGTTTGTTTTCAATAAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279973 lncRNA downstream 22463 30835073 ~ 30838562 (-) True G245249
TU280046 lncRNA downstream 38516 30819525 ~ 30822509 (-) True G245316
TU279983 lncRNA downstream 49492 30807814 ~ 30811533 (-) True LOC110518094
TU280035 lncRNA downstream 80060 30778191 ~ 30780965 (-) True G245308
TU280005 lncRNA downstream 148745 30712044 ~ 30712280 (-) True G245279
TU280079 lncRNA upstream 13490 30894975 ~ 30897112 (-) True G245347
TU280089 lncRNA upstream 18692 30900177 ~ 30902960 (-) True G245349
TU280093 lncRNA upstream 21947 30903432 ~ 30906992 (-) True G245350
TU280097 lncRNA upstream 32614 30914099 ~ 30914409 (-) True G245354
TU280102 lncRNA upstream 43590 30925075 ~ 30925313 (-) True G245359
XR_005042959.1 mRNA downstream 42923 30813299 ~ 30818102 (-) True LOC118951441
XM_021595838.2 mRNA downstream 49743 30800297 ~ 30811282 (-) False LOC110518094
XM_021595796.2 mRNA downstream 135619 30713906 ~ 30725406 (-) True p3h3
XM_021595782.2 mRNA downstream 150829 30697807 ~ 30710196 (-) True gnb3a
XM_021595792.2 mRNA downstream 150831 30697807 ~ 30710194 (-) False gnb3a
XM_021595877.2 mRNA upstream 183 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA upstream 183 30881668 ~ 30883557 (-) False LOC110518189
XM_021595883.2 mRNA upstream 183 30881668 ~ 30883558 (-) True LOC110518189
XM_021595923.2 mRNA upstream 49176 30930661 ~ 30933160 (-) True LOC110518255
XM_021595958.2 mRNA upstream 276941 31158426 ~ 31163476 (-) True LOC110518336
TU279011 other downstream 643436 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 643913 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 661255 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 683617 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 731811 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 63468 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 681060 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2537944 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3475790 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 4008021 34889506 ~ 34889954 (-) True G249978

Expression Profile