RNA id: XM_021595877.2



Basic Information


Item Value
RNA id XM_021595877.2
length 1132
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110518189
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30881668 ~ 30883558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGTATTGACTTTTTGAAATAGAGAAGCAAAGAACTCGGCTTTGTGGAAGTCACAGGCGAACCTTGCTGCTTGTGCAATTAACATAACAACcaaagaggtagtgatggatttCCCCAAACTTCTTTGCAGCTTCTATTTATTACAGCTGGTGGTCTGTCTTGGTCAGGCAAAGTGTTCAGTTCACAAGCTGGAGACAGGCATCTAAGGAAGTCCATGCCATGGTTCTGGAGATTGTGTGGAGACTATTGTCACCAGTGCAGTGGAGTCTGTGTCTTTTATCCCTTCTCCTGCTTCTCATAGTATCAATGTTATTATGTGCGATCCGTTCAAAAAGTAGAAAGACATCCAGGTTGTCATTGGCTGAAATGGGACCGATCTCTGGTGAAAGGCCTCCAGATTCAATTGAGGTCACGACCTCAGAACTAAGGAAGAACATCATTGGACCAGCATCCTCAAAAAGAAAGTCAACCCAGTCCCAAAGAGAACACAGAGGGTCTTTCCCAGGGCAGGATAACCCAAGGCCGGTGAAGAAGGCTTTGAGGCAGTTGCCTCCCTTACCTGAGCTGGAGAAGAGCAGTGTCCGACGACACAGCAGCTACACTGGGTCCGTAGTGTACGACGTTGTGGCCACAGAGGTCTGTAATCTATGGCCCACTACAGACAACAAGGCTTCTCAACAACATACAGCAGACTGCAGCAACCACCTGGAGGAGGAAGATGAAAAGGGGGAAATTCCGTTCCCTGTCTATGCCAAAGTCAACAAAACCAAAGTTTGCTCGAACTCATCAAGACGTTCACCACTGTATGCCAAAGTGAACAAGACTAGATCCCGGACTGTGAAATCGGAACTACTGTTCTGCAGTGACTGATAATAAGTCAACACTGTGACTGACATGTCCTCCAAATGCTAAATACTCTACTATGTTTTACGCCAAAAGCTTACTTGAGATAAATGCTTCAAATGCCAATCTGATTCATGTAAACGGATGACAAGTGTAATCCAATAGACAAGAGGAGTAAAACGTATCACTCACTCACAGAGCCAAATGCATCGAGTTGTTTTGTACTTTCTGAAATGTTCATATGCGTTTCTTATGTTGTTTCCCAGGCCCACAATGCTGCAAAGACACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU279973 lncRNA downstream 43106 30835073 ~ 30838562 (-) True G245249
TU280046 lncRNA downstream 59159 30819525 ~ 30822509 (-) True G245316
TU279983 lncRNA downstream 70135 30807814 ~ 30811533 (-) True LOC110518094
TU280035 lncRNA downstream 100703 30778191 ~ 30780965 (-) True G245308
TU280005 lncRNA downstream 169388 30712044 ~ 30712280 (-) True G245279
TU280079 lncRNA upstream 11418 30894975 ~ 30897112 (-) True G245347
TU280089 lncRNA upstream 16620 30900177 ~ 30902960 (-) True G245349
TU280093 lncRNA upstream 19875 30903432 ~ 30906992 (-) True G245350
TU280097 lncRNA upstream 30542 30914099 ~ 30914409 (-) True G245354
TU280102 lncRNA upstream 41518 30925075 ~ 30925313 (-) True G245359
XM_021595854.2 mRNA downstream 182 30861025 ~ 30881486 (-) True LOC110518140
XM_036973813.1 mRNA downstream 183 30861025 ~ 30881485 (-) False LOC110518140
XM_036973814.1 mRNA downstream 1473 30861014 ~ 30880195 (-) False LOC110518140
XM_021595858.2 mRNA downstream 4271 30861014 ~ 30877397 (-) False LOC110518140
XR_005042959.1 mRNA downstream 63566 30813299 ~ 30818102 (-) True LOC118951441
XM_021595923.2 mRNA upstream 47104 30930661 ~ 30933160 (-) True LOC110518255
XM_021595958.2 mRNA upstream 274869 31158426 ~ 31163476 (-) True LOC110518336
XM_036973837.1 mRNA upstream 482965 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 485723 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 678827 31562384 ~ 31581203 (-) False LOC110518371
TU279011 other downstream 664079 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 664556 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 681898 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 704260 30174013 ~ 30177408 (-) True G244379
TU278954 other downstream 752454 30088843 ~ 30129214 (-) True G244338
TU280109 other upstream 61396 30944953 ~ 30945843 (-) True G245366
TU280776 other upstream 678988 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2535872 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3473718 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 4005949 34889506 ~ 34889954 (-) True G249978

Expression Profile


XM_021595877.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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XM_021595877.2 Expression in each Bioproject

Bar chart with 8 bars.
XM_021595877.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.