RNA id: XM_021595866.2


Basic Information

Item Value
RNA id XM_021595866.2
length 4137
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110518162
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30882102 ~ 30897117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAATTCTCTTCCTAAAAGTAATATCCAAAGGCTAGTTCACGTCAGCTAGTTCACGTAAGGGTAGTGGGAGGGTTCAGTCAGTTGATAAACCCATCCCATTCCTAGAGACTGCAGATGCcatctgacctttgaccctcGGACCCGGCACCTCTAGTCCGTGCTCTATGACTTGCTGTGAGGCCATGTCTGCTGTGAACATCACCAGAGACATCTTGCACAGGCAGATCAGGGACAAGAGAGCATTGGGCTTCCAAAGGCAGTATCATGTCACAGACCCCTTCATCAATAGACTTGGACTGGAGGCAGAGTTGCagGGTCACACTGGGTGTGTGAACTGCCTGGAATGGAACGAACGGGGAGATCTGCTGGCATCGGGCTCAGATGACCAACATTGCATCATCTGGGACCCCTTCAAACACAAGAAGCTCACCACTATGCACACAGGGCATGCAGCAAACATCTTCTCTGTGAAGTTTCTCCCTCACTCAGGTGACCGTATCCTTGTGACGGGTGCAGCGGACACCAAGGTTCACGTGCATGACGTGTCTGTCAAGGAGACCATCCACATGTTCTCCGACCACACCAACCGCGTCAAGCGCATTGCTACAGCCCCCATGTGGCCTAACATCTTCTGGAGTGCTGCGGAGGACGGCATCATCAGGCAATATGACCTGAGGGAGAGCAGTAAGCGTTCAGAAGTGCTCATCGACCTTACGGAATACTGTGGTCAGCTGGTGGAGGCCAAGTGTTTGGCTGTCAACCCGCAAAATAATAACTACCTAGCAGTGGGGGCCAACGGGCCCTTTGTACGCCTCTACGACATGCGCATGATCCACAACCACAGGAAGTCTGCGAGTCAGAGCACATCGGCAGGAGTGCACACATTCTGCGACAGGCAGAAGCCCATCCCAGACGGAGCGGGGCAGTATTATGTCGCAGGGCACCTGCCAGTGAAGCTCCCTGACTACAATAACCGCCTGAGGGTCCTAGTGGCCACCTATGTTACCTTCAGCCCCGACGGCACCGAGCTGCTAGTTAACATGGGAGGGGAACAGGTGTATCTATTTGACTTGACGTTCAAACAGAAGCCGTACACCTATCTGCTTCCCAAAAAGTGTCCATCAACAGATGTTCAGAATGGAAAGACAACCAACGGTGTGTCAAATGGAATTCACTTGCCAGCCAGCCGACTTCGATTCGCAGAAAGCAAAGTCTTCTCTGGTTCTGGTGAGCTGCCGCCTCACTTGGAGCGGATAAAGCAGCAGGCCAACGATGCGTTTGCGCGGCAGCAGTGGACTCAGGCAATCCAGTTCTACAGTCTGGGCATCCACGAGGCCAGCCACAACGCCATGCTGTACGGGAACCGCGCCGCCGCCTACATGAAGCGCAAGTGggaCGGTGACCACTATGATGCTCTGAGGGATTGTCTGAAGGCCCTGTCCCTCAACCCTGGGCACCTGAAGGCCCACTTCCGGCTGGCGCGCTGCCTCTTTGAGCTGAAGTACGTGGCCGAGGCTCTGGAGTGCCTGGATGACTTCAAGGGCAAGTTCCCCGACCAAGCCCACAGCAGCGCCTGTGACGCCCTGGATAAGGATATCAAGGCCGCCCTCTTTTCCAAGATGGACTCTGCTGAGGACAAAAAGGGCAACAGCTCAATCCGCTTCCACACGTTCAACAGGAAGGAGTCCATCCCGGAAGACGAGGTCGTCTTGAGAGAGCGCAGCTACGACTACAAACACCGCTACTGTGGTCATTGCAACACTACCACAGACATCAAGGAGGCCAACTTCTTTGGCAGTAAAGGCCAGTACATTGTGAGCGGCTCCGACGACGGCTCCTTTTTCATCTGGGAGAAGGAGACTGCTAACCTGGTGCGGATCCTCCAGGGGGACGAGTCCATAGTCAACTGCCTGCAGCCTCACCCCAGTTACTGCTTCCTGGCTACCAGCGGCATCGACCCTGTGGTGCGGCTCTGGAACCCCAGGCCAGAGACGGAGAGTGAGAGTGGGAACGGTCGCGTGGTGGAGGACATGGAGGGTGCCGCTGCAGCCAACCAGCGGCGTATGAATGCCGACCCCCTGGAGGTCATGCTGCTCAACATGGGCTACCGCATCACGGGCCTCAGTGGCCGCGGGCCAGAGGGCTCAGACGATGAGGACAGCTCAGATGGCCAGGTGCAGTGCCGGCCCAGCTAGACTAGCAGGTCCAACACCACATACAGTATGGAGGCAGCAGGATGCAAGGCACTCCTCCCCTACCCCCTCCCAAACCCTgaggctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtctgtgtgtgtgtgtctgtgaggaggGGGAAAAAGCACCATAGATATTCCGTTTGTCAATGTTTCATTCGCCCCTCTAAAACGAATGCAACATCGAGTGAATGTCATGTCACAGCTCTGCACTATGCactgccctcctcctccacatcccgAGGCAGGATTGGAGGAAACCAGTTTGGCGAGGGGATTCCACGGGGGTGACGACAACGACCTTTCACCCCTTTTAAGAACACCAACAACATCACCTCGGCCGCTCCCTCCGTTGCTCCAAGGCTGGAGGTATTGGGCCTATACGGTAAAGAAGAGAGTACTCCATCACTCCTTAATCTCTCACTATGAGCTAAGAATCAACCACTTCTAAACCCTTCCCAAGAGGAAGTGCGTTGGAGGGAAACACTACAAGCAGAAGCCCCAGGCCTCTGGTAGTGTAGCCTGCAGACGgctcagaggttagaggtcaaagCGAGGCCCCAATAGTCAGTGTCCTCATTGGAGGATGAGACTTCAGGCCACAGGAAGTTGCTTTGTTTCACCTCTAGTGGGCTTTTCAATTGGAGTATAAGAGGTCACTCTCTGCCCCTCTCCAGCTCTGAATGTCTCTACCTAAAGTTTTTGATTTACAGTCCTTTTTTTAAAGTTGTTGGAATATTGGTCAACTGGAACAGAGCAGAAGAAGTCTTGACTTTAAGTGTTAACAAGTCTATTAGTGTTTCTCCAACTCAACTTAAATGTGTTGTTAGGATTGTGCACCTTGTTTCTTTTAAACTCGgtctggcaaaaaaaaaaaagtttctctTCATTTGTTCAAAGTTTTAAGAGTAAATAATGGCCAAGGATCCATGTTGCATTTGCTTTGTCTGTTGAGAAGTTCTTCTTGTCGCTCTATATGCCTATTTTATTGACAGGTATGCAAAATGTTTCCCTTTTACTTTTATTATGTAGGTTAAGACAAAGCTGTCAAACTGAAGCAGTAGCTCCGCACATTttctccaacacttagacatttGCTCCTCTGTCATTTGTTGATAATGATGTAGAGCCGGAAGGGTTGTGGGGTTTAGTTTAAGGGGTTTGATTTAATTGATAGTCAGGTGTTGATTGGTCAGAATCTGTCGAACTTTGTTGTACtaaggttgcaaaattctggtaattTCCACAAAATTCCCAGTTTTTATGAGATATCCCGGTTGGCAGATAACCAGGATCCGGATGGAATAAGCATGAAATCATGAATCTTCCAACCagtatttctggaaaaccagggaattatGGGAAAGTGATGccctgaacagagagagggaaagtgatgAAGAGAGAAGGGTATTTCACTATCCTAGGGCAATACCACCAGTCCTAATATCACTCATGCATGGCATAGAGACAATTTCGTAGACGCAATCCATTTGGTGGCTTTAGGGGTTCAGGATCCCTATACAAGCACTTTCAGCTTTCCCCAGAACATTTTGGGGGAAAGAATGGAATAGGGATTGTTCCCTTCCTGTAGCTTTGGACCCAGCATGAGTCTTCTGCTGCAGTTGGAGTTTTACTTATGAGATTTTGTCTAAAGTTAACATTGTAAATGGCAAATTTAGACAATGAGCCTCTTGGTCCTCTAGCCGACCAGCAAACCACCAGCTCACTGATGACGTGGGTTCAAAGAAAACCTAAGGATGGAGTCCTCTAACACTAGGCTTCCATGTGTAATTTCTTTTGTTCAAAAAtaatttaagaaatgttttgtttatttttctttggGAAAAATCCCACTACAAAGTTTGCTGCAAGAGAAAAATAAAAGAGGTCTAATGTTGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279522 lncRNA upstream 34996 30849195 ~ 30849811 (+) True LOC118944663
TU279517 lncRNA upstream 40776 30840265 ~ 30844031 (+) True G244838
TU279508 lncRNA upstream 60713 30817708 ~ 30824094 (+) True G244831
TU279443 lncRNA upstream 88535 30720530 ~ 30796272 (+) True G244783
TU279438 lncRNA upstream 172556 30711946 ~ 30712251 (+) True G244779
TU279504 lncRNA downstream 7490 30904607 ~ 30907005 (+) True LOC110518221
TU279560 lncRNA downstream 28409 30925526 ~ 30926079 (+) True G244875
TU279575 lncRNA downstream 57860 30954977 ~ 30955308 (+) True G244890
TU279581 lncRNA downstream 64221 30961338 ~ 30962556 (+) True G244896
TU279594 lncRNA downstream 77890 30975007 ~ 30975235 (+) True G244909
LOC118944663 mRNA upstream 24316 30840656 ~ 30860491 (+) False LOC118944663
XM_021595817.2 mRNA upstream 86449 30787180 ~ 30798358 (+) False LOC110518073
XM_021595822.2 mRNA upstream 86449 30787208 ~ 30798358 (+) True LOC110518073
NM_001124633.1 mRNA upstream 99066 30781946 ~ 30785741 (+) True cd209
NM_001124539.1 mRNA upstream 110406 30769936 ~ 30774401 (+) True cd4-1
XM_021595901.2 mRNA downstream 961 30898078 ~ 30902252 (+) True LOC110518231
XM_021595890.2 mRNA downstream 5278 30902395 ~ 30904967 (+) False LOC110518221
XM_036973834.1 mRNA downstream 20905 30918022 ~ 30923532 (+) False LOC110518244
XM_021595915.2 mRNA downstream 20912 30918029 ~ 30924289 (+) False LOC110518244
XM_036973835.1 mRNA downstream 42204 30939321 ~ 31127606 (+) False LOC110518266
TU279535 other upstream 10199 30865566 ~ 30874608 (+) True G244851
TU279342 other upstream 252274 30631770 ~ 30632533 (+) True G244691
TU278893 other upstream 747243 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 1194011 29668379 ~ 29690796 (+) True G243679
TU277370 other upstream 1850093 29031711 ~ 29034714 (+) True LOC110517275
TU279506 other downstream 20914 30918031 ~ 30919146 (+) True LOC110518244
TU279569 other downstream 47621 30944738 ~ 30944862 (+) False LOC110518266
TU279642 other downstream 139400 31036517 ~ 31037252 (+) True G244956
TU279677 other downstream 189652 31086769 ~ 31087255 (+) True G244991
TU279568 other downstream 228289 31125406 ~ 31126267 (+) False LOC110518266

Expression Profile