RNA id: XM_036973835.1


Basic Information

Item Value
RNA id XM_036973835.1
length 7443
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110518266
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30939321 ~ 31127608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGTGTCCATCATCCATCTAAATCGGAACTTTCCGAATTGTCCTGAACACGGCATCAGCTTGCTAGAGTGACGTGTAGTACGTGCTACGGTACGCCACTTGTGACCAAGGGAGAAAAGCGCGGACATTGAGAATATTGGGGAAATTGTAGGAACAGGATCATAACTTAATTGATTGCTGGAACAGAGTCCAATTTCCTCTTCTCATGTAAAGGCATCAGGAGGTGTCTAACATGGACAGAGAATTAAGGTCAGGGAAGGAAATTAACGAGGACAAGGTGCCTCATCATGGTGACACAGGAAatgtctccacagaggaaatggAGAGTGGAGGAAGTCCTTCCCTAGCAAAGAGGCCCAGGCCTGATGATGTCACAGCTGACAGCACAGGAGGGATTGAGGAGGACACCGGCGGTGAGGTGGCTGATGGGAAGGAGTCAGACCAGCCCCCTCGGGCTGAGATGAACATTACCCCGGAGACATGTTACGGCCGTGCCTGTCCCATCTGTGGCTTTGTGGCCAAAACGCCAACTTCCTTGAAGATTCACTCCAAGAGGAAGCACACCGGTAGAGGAAAGACCAGGGGTGTGAGCTCAGCTGAGGTACTTGTTGAAATAGATGGCTCCACAACCGGAGCAACAGCACGGAGTTCAAATTACAAGACAGGTGGAGACACTGAGTGGAAAGtgagcagcagagagagacagcaggatgcCACAGAGAGTCAGGGCTCAGAGGCAGGAGGTTCTGAGGGGGAGGTGACTACAATAATAGCCAAAGAGGAAATAGCTGAGATAcaagggacagggagagatgctTTTGACAGGAAGAGGACTCCAATAGCTACAGAGGAGATTGCAGAGGAGGAGCAAGAAAAGACCCCCGGTAAGAAGATGGCAGGTAAACGGGGCACCAAGCCAAAGACTATACATGCTTGCAGCTACTGTGGTCACGAGTTTAAGGACAAGCCGAGCCTAGATACACACATCAAGAGACGCCACACCAAGGAGATGAATTACTTCTGTGAATTCTGCTTGTACGCCTGTGTGGCAAAGTGCGACTACGAAAAGCACTGTCTTAGTAACAAGCACAACAAACGAGTCACGGAAAGCAGGGAATCCTCTGGCCTCTCGTCACCAACGGACAAGAAGACAGCCGAACAGGCTCAAATCTTTGCCTCCACGACGACTCAGACCTGGGCTTCCAAGCGTGCACTCGGTGCCAGGTTCCAGCTGCAGTGCGGGAGTTGCGAATTCAGGGTCAGCAACTCTGCTTTGCTGGAGAGCCACGCTCGGCTAAAGCACCATGGCGAGCATCGCTTCCTCTGTAACGTCTGCCACTACTACACCGCTACATCTGAGTGGATGGACACACACGTGTCCTCGGAGAGCCACCAGCGTGTGGCTGAGGAGAAAAACACAGGGTCCTCCTTTGAGGACTGCGTTGAGAAGGTGAGCGTAGATGCGGTCGGCGACGACATGCTGACAGATGACGTGGCAGTAGGGGTCATCGGACATGACGGAGAGCTGCACCCTGATGTTAATGAGGATGCTGTTGAAGCTGCGAAGGCCGTGTTGGAGAACATGGAAGAGCACATGGACGAGAGAATCCCTCccaagaggaggagaggcaggccaAAGGGACCCGCTGCAACTACATGTGAACACTGTGGCCTTCTCGCCTCCAATAGTACCAATCTAAACGTGCATATTCGTCGTAAGCACAGCCGGCAGTACAGCTTCACCTGCAGGCTTTGTTCTTACAACTGTGTGACGAAAGGCGACATGGACCGCCACTGTGTCACAAAGAAGCACCTTAAACGCGCGGAGGATGCTAGCAGCGATGGCCAAGTGGACCTGGATACATCAGTGCAGGTCGTGAGTACAGAGTCAGGCTCTCAGGCCAGCGAGGGTGAGGCTATACATCAGAATAGTCCAGTCAGAGGAGGGTccaaaggagagggaggggccaCGGACAAAGAAGGGGAGCTGTCGCAAGACGACGACAAAGCACAAGTGAGCAGCCCGAAAAAGAGCAAGTACGACTTGGTCAACTCCTGCAGCCATTGCATGTTCGTAGCTCATTCGATTCCCTCCCTCGACCTCCACGTGAAGAGGAGACACACCCGGGACTTTGAGTTTGTGTGCCTGGCGTGCAGCTACTATGCGGTCACGCGTCGAGAGATGTCTCGCCACGCCTCCACGGACAAGCATAAGCAGAAGAGCGAGGTCTACCTAGAGAACCTGGAGAGCTTTGTGGCAAAAGACCTGGCACAGCCGGAGGAGGAGGCCAcggagctggggaacagagctgacCCTGATGCTGACAACAATGCTCGCACTGAGGATCCTTCCCCTTCAGTGCCCTCTGACACAGACATGGAGCAGCCCACTAACACAGACACAACTACAGACCAGCCTAACATTATAGACACAGACCAACccaacaacacagacacagatcaGCTCCCTATCATCGATGCAGAGAAACCCACAGACACAGATGCAGACCAacctacagacacagacacagaccagcTCCCTATCATCGATGCAGAGAAACCCACAGACACAGATGCAGACCAACCTACAGACACAGACCAGCCCAACAACACAGACACGGACCAGCTCCCTATCATTGATGCAGAGAAACCCACAGACACAGATGCAGACCAACCTACAGACACAGACCAGCCCAACGATACAGACAAGGACCAGCCCCCTTGCACTGATACAGACCAACCCACTAACACAGATACAGACCAATCCAAAGACATAGACCAGCCCAACATAATTGACATAGACCAGCCCAACATCACTGACATAGACCAGCCCAACATCACAGACACAGACCAGCCCCCTATCACCAATACAGAGCAACCCACAGACACAGCTACAGACCATCCCACAGACACCAAACACCCCACACAGACTTCTGACGTTTTGAGCAACGAGCATGCAGCCCCAATAGTGGAAGTTAGTGGCATTGTTGCTGAGGAAAACACGGAGATCCAGGTGGCTGGTGAGGCATCCGGTGGTGTCGCGGAACAAACCAGCAATGAAGCCCCAGGTACAATTGATCCTCAGGTTGCACCAGCAGAAATCACCATAACACCGCCTGAGGAAGGCCAGAAGGAAGGGGCCGAGGCAGAGCCAGTCTGTTCCGACGACGACGTTGAGATGGCAGATGAGAAACCTGACATCTCTTCCCCAGAGAAACAGCTCACCAGGGCACTGCCATTTGACGCTTGCATCGTACCTCTCAAGTCCTTGACTGAAGCCGAGCTGGCTCTGCATGAAGAACGAATGGCTCACTCTGTTGAGGACCATTCTGGCCCGGCTGTAAGTGGCCTGACCGGGGCGGGCAGTTTTCAGAAGATCAAAAGAACCAAACCTGTAGGGGCTTCAGGTCTGTCCAAGCGGTTAACTCCCAACCCCCGCATCCGCTGCGAGGACTGTGGCTTCGTGGCGGACGGCATGAGCGGCCTCAATGTGCACATCTCCATGAAGCACCCGTCCAAGGAGAAGCACTTCCACTGCATGCTGTGCGGCAAGTCCTTCTACACGGAGAGCAACCTGCACCAGCACCTGACCAGCGCCGCCCACCTGCGCAACGAGCAGGCCAGCATCGAGGAGCTTCCGGAGGGCGGCGCCACCTTCAAGTGCGTGAAGTGCACGGACCCGTTCGAGACGGAGCAGGAGCTGTTCGTGCACATCAAGGAGAAGCACGAGGAGCTGTTGCGCGAGGTCAACAAGTACGTCCTGGAGGACACGGAGCAGATCAACCGCGAGCGCGAGGAGAACCAGGGCAGCGTGTGCAAGCACTGCGGCAAGGTGTGCATGAGCAGCAACTCCATGGCCTTCCTGGCTCACATccgcacacacacagGATCGAAGCCGTTTAAGTGCAAAATCTGCAACTTTTCCACCGCCCAGCTGGGTGACGCCAGGAACCACGTGAAGAGACATCTGGGCATGAGAGAGTACAAGTGCCACATCTGTGGGTGGGCCTTTGTGATGAAGAAGCACCTGAGCACTCACCTGTTGGGGAAACATGGACTGGGCCAGCCCAAAGAGAGGAAGTTTGAGTGTGATCTTTGCGACCGGTCGTTCAGTGAGAAGTGGGCTCTGAACAACCACATGAAGCTGCATACGGGGGACAAGCCCCATAAGTGTGCCTGGCCATCCTGCCACTACGCCTTCCTCACCCTGTCTGCCATGAAAGACCActacaggacacacacagGAGAAAAGTCCTTCCTGTGCGATCTCTGTGGTTTTGCGGGTGGCACGCGACACGCCCTCACCAAGCATCGCCGGCAACACACAGGAGAACGGCCCTTCAAGTGTCAGCTGTGCGGCTTCGCCTCCACCACCCAGTCCCACTTGACCCGCCACAAGCGCgtgcacacaggggagaagccctaCCAATGCCCCTGGTGCGACTACAGATCCAACTGTGCGGAGAACATCCGAAAGCACATCCTGCACACGGGGAAGCACGAGGGAGTGAAGATGTACAACTGCCCCAAGTGTGACTACGGCACCAACGGCCCCATGGACTTCAGGAACCATCTGAAGGAGCATCACCCCGACATCGAGAACCCTGACCTGGCCTACCTGCATGCAGGTATCGTGTCCAAGTCGTTCGAGTGTCGTCTAAAGGGCCAGGGAGCCACGTTCGTGGAGGTTGACACAGCGTTTGACGGGGCGTTCCCGGTGCGAAGGGTGGGCTCCATGGAGGGGCTGGAGGGCCAGGAGGGTGTCCAGCAGGTGATCATCATCCAGGGTTACGGCAGTGGGGAGATGGCCTTCGACCAGGCCCTGGAAGAGTCAGCCGCTGCCACCCTGCGAGACCTGGCCATGGCGGGACAGGTGGCCGAGGTGCTACATATCACCGAGGACGGCCAGGTCATCTCCTCGGGGAGGGAGGTGTCTGCAGGCGGGGCCCATCACCTGGCCGGAGGCACCACCCGGTACGTCCTGCTGGAGTCCGGCGGGTCTGCAGCCGGAGGTCACGGGGGTCATGGGGGAGGGGCGACGCACCACCACATGGTGTCGGAGTCATCCACGGCTCTGGATGCCCTCCTCAGTGCCGTCAGCGAGATGGGCCAGCAGGAAGAGGACAGCCAAGAGGTCATGACTCAGGAAGTTGTGTCAGAcgtggtggaggaagaggaggaggcggAGGTGAAGACGGGGGAGGAGGTGTGGGAGGAGCAGCAGGTGCAGGAGGAGCAGGTGGTCCAGGAGGTTCTGCAGTTTGCAGCCAGCCATCTGATGAAGGAGGGGCTGACGCAGGTGATCGTCAACGATGAAGGGACCCACTACATCGTGACGGAGTTGGATGACAATACCCTGCAGGTGGAGGGGACCATGTACACCCAGCACCAGGGAGGGGAGGACGACCAGCAGAGCGAGGGAGTTTCAGAAGGCCAGGCTGGGGAGAGGATGGTCTACTACCTGGATGGAACGCCACACAATGTGGTTCTGGAGAAGGTGGAGGTGGACTAGTCGGTGACTGTGGCGAGAATCTCATCTggatttccttgattcctcgagtcctctcctcacctccttctcaaaacccgtTGGATAAGAAGTTATAGGGGAGTGACCTCTGTCTGACCTTTTCATCCATTGGGTTGGAGAAGGAGGCGAGGGGAGAGAATGCAGTTGAGACTTTCCCTGTGTGAAGACCAAATGTCCAGCTTAAAGCCCCTAAGAGTCTTCCTCTTTGTCTCTTTCATTGAAAAtgtcatgtattttttttttacatagctTTATCTCCGTTTTGCAACGATCAACTCAGGATAACATTCACATCTATAGAGTTCTAGTGAGGTGCAAAGTCTTTGGTGCTAACATTATTTAACATTTGCATTATTTTATGACCAACACCAGAATTACCACTTGTTTTTGGAGTCATGACTGGAAATACATAGGCTATTTTCAGTTGcaaaaataatacttttaagattaCATAACGGGAAATGTTCCCGTTATCTAGAAAGACGTACAATCTTTAAGTTGCGCGATTTGTTTTTGTTGAAAGTTGGAGAATAATAGCAGCTTTATTTTTCAGTTTGATATGGTTTTACTAGAAGGACGATATTCTGCTATTTGTTTAATCAGCCCATTGTtggttttgcatgtcagcaatccaGTTTTAACATATATCATtttcaaaacacagaaataccgcTGGTATGATGCAAAAGGCAGCATCATCTTGCATCATACCAgctgtatttctgtgttttgaatGTTATTTATCTTGAAAACTTGTTTGCTGATATGCAAAACATTTCTgtactatatcaacaatggactaatgaaacaaataccaaaatattgtttttgggtggagttttcctttaagtaGTGAATTAGTTTGCAATTGtaagttaaacaatttttttttgtttgtttatttaaaaaGGTACATTAATAGGTCTGTTTTGATAACAGACACCTTGCTTTCATACCTTGCTGAATCAAATACATCGAAAATATCCAGGCTGCTGATTGGTCTAAATCCAGGGGCAGTCCACTGATTGGCTTTGTTTTCAGCAAATTCCTAAATATGGTCAGAATGCTGATTGGTCTGAATCCAGGGGCAGTCCACCTGTTTTTCAGGATGTTCTCAAAATGTCACGGTGCTGACATTGTTTTGCATCATTATTAAGTTCTCTCATAGTGAGTGTCCTTTGACCGTCAAAATAGGACAAATGAATTGGATTGCCACAGAAACATGTGTTTGACAGAATAGCTTGGTGATGACACAACATTTAGTGAGTTTCTGATAATCATAATTAAATTAAAGTTGCTAAGTATTTTTCTCCATTGGTTTTACTGCTCTCAGTTATTGTAAATATATGTTTCTGTAAATGAAATTGCAATGAGACTTGCGTTTGACTAATGACAATAAAGCTCAGTCTTCATTTTTGGAGGGTTGCTAGTTCACCTCAAGTTTTCTATGACAGTGTTACAATCTCCTATTCACATCAACCACATGAACTTACATGCATCAACTGACATAGGAGCTTCGACCAAGTGTGTTTCCAATCACCATCATCATGATCATCACCATTGTCATTATCACCGTCATTATGATCAGCATCATCCTAATCATAAATACGCCTCTCCCTCAGCCAGCCCCCTATTCTCTCCCTCCATTGTGTTGAACACACACATTCTTTCTCCCTACAGTATTCAAGAGCTGGAAGAGGGAATCAATATCCACTTAGGGCCGTAGTACAGCCTAGGCCCTGATTGAGTGAGTGGGAGCCGAGAATGACGGCTATGAACACAATGACGAAGACTGGCTTGCACACAGGGGCCACCAGGAGATCATCTGTTTAATGTAACacagccaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU279560 lncRNA upstream 13242 30925526 ~ 30926079 (+) True G244875
TU279504 lncRNA upstream 32316 30904607 ~ 30907005 (+) True LOC110518221
TU279522 lncRNA upstream 89510 30849195 ~ 30849811 (+) True LOC118944663
TU279517 lncRNA upstream 95290 30840265 ~ 30844031 (+) True G244838
TU279508 lncRNA upstream 115227 30817708 ~ 30824094 (+) True G244831
TU279725 lncRNA downstream 3246 31130852 ~ 31131117 (+) True G245037
TU279737 lncRNA downstream 24896 31152502 ~ 31152732 (+) True G245049
TU279739 lncRNA downstream 28047 31155653 ~ 31155975 (+) True G245051
TU279710 lncRNA downstream 30919 31158525 ~ 31160197 (+) True G245022
TU279712 lncRNA downstream 77191 31204797 ~ 31205011 (+) True G245024
XM_021595915.2 mRNA upstream 15032 30918029 ~ 30924289 (+) False LOC110518244
XM_036973834.1 mRNA upstream 15789 30918022 ~ 30923532 (+) False LOC110518244
XM_021595890.2 mRNA upstream 34354 30902395 ~ 30904967 (+) False LOC110518221
XM_021595901.2 mRNA upstream 37069 30898078 ~ 30902252 (+) True LOC110518231
XM_021595872.2 mRNA upstream 42204 30884849 ~ 30897117 (+) False LOC110518162
XM_021595953.2 mRNA downstream 34792 31162398 ~ 31203098 (+) False LOC110518315
XM_021595949.2 mRNA downstream 36491 31164097 ~ 31203098 (+) True LOC110518315
XM_036973840.1 mRNA downstream 345678 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA downstream 345679 31473285 ~ 31558583 (+) True LOC110518348
XM_021596003.2 mRNA downstream 523006 31650612 ~ 31660620 (+) True LOC110518390
TU279506 other upstream 20175 30918031 ~ 30919146 (+) True LOC110518244
TU279535 other upstream 64713 30865566 ~ 30874608 (+) True G244851
TU279342 other upstream 306788 30631770 ~ 30632533 (+) True G244691
TU278893 other upstream 801757 30132399 ~ 30137564 (+) True G244292
TU278253 other upstream 1248525 29668379 ~ 29690796 (+) True G243679
TU280571 other downstream 415047 31542653 ~ 31625043 (+) False G245799
TU280718 other downstream 542352 31669958 ~ 31680640 (+) True G245930
TU281088 other downstream 725062 31852668 ~ 31859319 (+) True G246282
TU282359 other downstream 1644164 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 2296183 33423789 ~ 33424103 (+) True G248134

Expression Profile