RNA id: TU279568



Basic Information


Item Value
RNA id TU279568
length 862
RNA type TUCP
GC content 0.45
exon number 1
gene id LOC110518266
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 30939321 ~ 31127608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTCCAGGAGGTTCTGCAGTTTGCAGCCAGCCATCTGATGAAGGAGGGGCTGACGCAGGTGATCGTCAACGATGAAGGGACCCACTACATCGTGACGGAGTTGGATGACAATACCCTGCAGGTGGAGGGGACCATGTACACCCAGCACCAGGGAGGGGAGGACGACCAGCAGAGCGAGGGAGTTTCAGAAGGCCAGGCTGGGGAGAGGATGGTCTACTACCTGGATGGAACGCCACACAATGTGGTTCTGGAGAAGGTGGAGGTGGACTAGTCGGTGACTGTGGCGAGAATCTCATCTggatttccttgattcctcgagtcctctcctcacctccttctcaaaacccgtTGGATAAGAAGTTATAGGGGAGTGACCTCTGTCTGACCTTTTCATCCATTGGGTTGGAGAAGGAGGCGAGGGGAGAGAATGCAGTTGAGACTTTCCCTGTGTGAAGACCAAATGTCCAGCTTAAAGCCCCTAAGAGTCTTCCTCTTTGTCTCTTTCATTGAAAAtgtcatgtattttttttttacatagctTTATCTCCGTTTTGCAACGATCAACTCAGGATAACATTCACATCTATAGAGTTCTAGTGAGGTGCAAAGTCTTTGGTGCTAACATTATTTAACATTTGCATTATTTTATGACCAACACCAGAATTACCACTTGTTTTTGGAGTCATGACTGGAAATACATAGGCTATTTTCAGTTGcaaaaataatacttttaagattaCATAACGGGAAATGTTCCCGTTATCTAGAAAGACGTACAATCTTTAAGTTGCGCGATTTGTTTTTGTTGAAAGTTGGAGAATAATAGCAGCTTTATTTTTCAGTTTGATATGGTTTTACTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU279702 lncRNA upstream 13746 31111458 ~ 31111660 (+) True G245015
TU279681 lncRNA upstream 31454 31093712 ~ 31093952 (+) True G244995
TU279679 lncRNA upstream 32605 31092602 ~ 31092801 (+) True G244993
TU279678 lncRNA upstream 36215 31088979 ~ 31089191 (+) True G244992
TU279676 lncRNA upstream 38748 31086395 ~ 31086658 (+) True G244990
TU279570 lncRNA downstream 278 31126545 ~ 31126945 (+) True LOC110518266
TU279725 lncRNA downstream 4585 31130852 ~ 31131117 (+) True G245037
TU279737 lncRNA downstream 26235 31152502 ~ 31152732 (+) True G245049
TU279739 lncRNA downstream 29386 31155653 ~ 31155975 (+) True G245051
TU279710 lncRNA downstream 32258 31158525 ~ 31160197 (+) True G245022
XM_021595915.2 mRNA upstream 201117 30918029 ~ 30924289 (+) False LOC110518244
XM_036973834.1 mRNA upstream 201874 30918022 ~ 30923532 (+) False LOC110518244
XM_021595890.2 mRNA upstream 220439 30902395 ~ 30904967 (+) False LOC110518221
XM_021595901.2 mRNA upstream 223154 30898078 ~ 30902252 (+) True LOC110518231
XM_036973815.1 mRNA upstream 228289 30884884 ~ 30897117 (+) True LOC110518162
XM_021595953.2 mRNA downstream 36131 31162398 ~ 31203098 (+) False LOC110518315
XM_021595949.2 mRNA downstream 37830 31164097 ~ 31203098 (+) True LOC110518315
XM_036973840.1 mRNA downstream 347017 31473284 ~ 31558583 (+) False LOC110518348
XM_036973839.1 mRNA downstream 347018 31473285 ~ 31558583 (+) True LOC110518348
XM_021596003.2 mRNA downstream 524345 31650612 ~ 31660620 (+) True LOC110518390
TU279677 other upstream 38151 31086769 ~ 31087255 (+) True G244991
TU279642 other upstream 88154 31036517 ~ 31037252 (+) True G244956
TU279569 other upstream 180544 30944738 ~ 30944862 (+) False LOC110518266
TU279506 other upstream 206260 30918031 ~ 30919146 (+) True LOC110518244
TU279535 other upstream 250798 30865566 ~ 30874608 (+) True G244851
TU280571 other downstream 416386 31542653 ~ 31625043 (+) False G245799
TU280718 other downstream 543691 31669958 ~ 31680640 (+) True G245930
TU281088 other downstream 726401 31852668 ~ 31859319 (+) True G246282
TU282359 other downstream 1645503 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 2297522 33423789 ~ 33424103 (+) True G248134

Expression Profile