RNA id: XM_021595958.2


Basic Information

Item Value
RNA id XM_021595958.2
length 2362
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110518336
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31158426 ~ 31163476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGAAAGGAGACACGCCGCTACAGTAGGAGTTTGGCTGCCGCTACAAGGTTGCGCCGTGCTATAGCCTAGTGATCATCAAAGCAAACATTGCAAAAGCACGTTATTGCGTGTCGATCTTCtgcgacaacaaaaaaaaacagcgcGGCTAATATTGTTTTAATCGCATTGCATCGGCGTGGCCTACCCTGCTACGTGAAGAAAGCCTAGCATAGGCTAACGATAAACATATTGATATCAACGCACAGCCAGTGCCCGTGAACTTTGTCACATAGTCCCTCCCTGGTGCAATGTCCACCTCTTTCTTGTTGAGAAACGGTAAGAGGGTGTTTTCGATAATCGGCGGTGTGTGCAGAGGAACCGATGCACTTTCCAGAGTTAATTTTATATCGCGTCGCTTCATTGTAGATTTGTCATACTCCACGCACTTCATGGATTTTAAAGGTTCTTCGATACCGAGCTCCATGAAAAAGCTGGTCGTAACGAAGCTCAGCCAGAATTTCAGAGACGCCGTTGCCTTACAAACTGTTCCAGTCCCGACACCTGGCGACGGGGACTTGCTTGTCAGAAATCGATTTGTTGGAATCAATGCCTCGGACATCAACTACTCAGCAGGCCGCTATGACCCTACGGTGAAGCCACCGTTTGACGCCGGGTTCGAGGGCATTGGCGAGGTGGTCGGACTCGGCCTGAGTGCCAGCGCCCGTTACACCGTTGGCGACACAGTGGCCTACTTTGCTGATGGGGCCTTTGCAGAGTACACGGTGATACCCATGATCAAGACCGTACCCGTACCCGCGGTGAAGCCAGagttcctcaccctgctgttaagCGGTGCCACGGCTTATATAGCCATGAAGCGGCTTGGCGACCTAGTGAAGGGCGAGACAGTGCTGGTGACGGCCGCTGCCGGTGGCACGGGCCAGTTCGCCGTGCAGTTTGCCAAACAGGCCGGCTGCCACGTTGTGGGCACCTGCTCCTCCAATGAGAAGGCTGGCTTCTTAAAGACCATTGGCTGCGACAGGCCCATCAACTACACGTCCGAGGACCTGAGCGCCACGCTGCGCAAAGAGTACCCACAAGGCCTGGACGTAGTCTACGAGTCCATAGGCGGCAGAATCTTTGACATGGCGGTCAACAATCTGGCCAATAAGGGCAGGCTGATCGTGATCGGGTTCATCTCAGGGTACCAAACGGCATCAGGGGTCCCAACTGTTAAAGGAGGGACTCTGCCCGTGAAGCTGCTCCAGAAGTCAGCCAGCGTGAGGGGGTTCTTCCTACCTCACTTCCTGTCTGACTACAAGGAGGCGATGGGAAGCATGATGCAGATGTTTGCTAAAGGGAAGCTGGTGTGTGAAGTGGACTGTGGGGACATGGCCCCCGAGGGCCGTTTTGTGGGGCTAGAGTCCGTCTTTAGGGCTGTGGACTACATGTACGCTGGGAAAAATGTTGGaaaggtggtggttgaggtgacTCCACCCTCACTGGACAGCAAACTGTGATTTGCCTTAATGTGAATGCACTGGAATCctcaaacaaatcaaatcatatgTATGTATAATGAAATGAACTATGCAAGTACATATGTTGAAGGCAAATTACCCAAACTGTGACAATCTACAGTACTCTTGAGTTGAATATATTTTTCACCTGAATCTCTTTTGATATTACTAAAATGTTGTTCTGTTCGAGACAGTTCCTTTATGTTTTGATGATTGTACTGAATAAAGCAAAGCCAAATTCCCAATGAACGGGGATCATACTGAAAATTGCTGGTGTAACAGAAGGTTATCTCAAGAAAAGAATACTGTACCCCTCTAGTTCAAATGCCTCCCTCATTCTcatgctgtcacacacacacacacacttgtttaaTTGCTCTGTGCTCAAGACTAGAGCTAACTAAAATTTGTATTTACAGTAACTAGACCAGTGGCTGCATTGACTGTCCACAGCTTATGCTTGATTACTGCACTTCAGACAATGTACCAGCATATCAGCTGAACTTGTCCCTCTATTTAACAGGAAACAAAGTATCTGAGGACAATAGTGCATAATGATCACATTTAGTGTTACCAGTTTAAACCTCTGTCATACTTTTGGAATAAATGCCTAAGCATGCCCAGAGCAATTGACCCATTTAGTccctcacacatatacacacacacacacacacacacaacatattaCACATTCATATAATTAATACATTAACTTAAATCAACAGAAAAACAATGTATTGTAGATGTACAGTagtttttaaacagcacatttTGAGAAGTATTTGCAATGTATGATGTGTAATTAACATTCAAATATCTAGAATACATTATCTTACATTCTTGATTAAAAAATGAAATGTG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07119 PTGR3, ZADH2; prostaglandin reductase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280219 lncRNA downstream 596 31157020 ~ 31157830 (-) True G245475
TU280239 lncRNA downstream 6562 31151632 ~ 31151864 (-) True G245494
TU280226 lncRNA downstream 26462 31131747 ~ 31131964 (-) True G245482
TU280225 lncRNA downstream 31031 31127160 ~ 31127395 (-) True G245481
TU280211 lncRNA downstream 32195 31125382 ~ 31126231 (-) True G245468
TU280248 lncRNA upstream 9768 31173244 ~ 31173738 (-) True G245502
TU280261 lncRNA upstream 41109 31204585 ~ 31205040 (-) True G245515
TU280262 lncRNA upstream 42083 31205559 ~ 31205772 (-) True G245516
TU280444 lncRNA upstream 119532 31283008 ~ 31283293 (-) True G245688
TU280533 lncRNA upstream 271039 31434515 ~ 31440678 (-) True G245774
XM_021595923.2 mRNA downstream 225266 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 274868 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 274869 30881668 ~ 30883557 (-) False LOC110518189
XM_021595881.2 mRNA downstream 274869 30881668 ~ 30883557 (-) False LOC110518189
XM_021595854.2 mRNA downstream 276940 30861025 ~ 30881486 (-) True LOC110518140
XM_036973837.1 mRNA upstream 203046 31366522 ~ 31418893 (-) False LOC110518297
XM_036973838.1 mRNA upstream 205804 31369280 ~ 31418894 (-) True LOC110518297
XM_036973841.1 mRNA upstream 398908 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 398908 31562384 ~ 31581203 (-) False LOC110518371
XM_036973843.1 mRNA upstream 398908 31562384 ~ 31581203 (-) False LOC110518371
TU280109 other downstream 212583 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 940837 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 941314 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 958656 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 981018 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 399069 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2255953 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 3193799 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3726030 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3732482 34895958 ~ 34896296 (-) True G249990

Expression Profile