RNA id: XM_036973838.1


Basic Information

Item Value
RNA id XM_036973838.1
length 5086
RNA type mRNA
GC content 0.58
exon number 6
gene id LOC110518297
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31366522 ~ 31418894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGCTTCAACTAACTTCAGCCTCACGGTGCAATCCCATGGCCCCACTTCTGACACCGATATAGCTCATTTAGAGCGTGGGAAGCGAACCCGGGTCTCTGTGAAAGGTATACACCCTACGCATCTTGCCAATATGTTAACTCGGTGGGAATCGTATAGCGTGGGTCGCTACAGTATATTACTTATAATTACGTAGGCCAATTAGAAGTTAGACTAGTTCATCTAGGCTATTTGTTAGGGATTTATCTGATTCCTCTGTCTGTAACTGCATGCATTCCAAACGGCTTCTATCTACGACGTGCGTAAGCAGGTTTGAGAACCTGTCTGAATTGAATCCAAATGATAACACATTGATAGTCAATATGTTGGCGAATATACAAGTGTTGGGCCAACATGTCATGTCGTCGTGTATGTCAACCGAATATTTGATTTAGTATAGTATCAAGAACTTTGTGCTGATGGAGACAATAGTAAATAGTTCATTTAATGCGGGAGAGACCATCCACAGCCACTGAAAGGTGTATCCATGAAACGACCGAGGCGCAAACGTCTTGGTTTTGCTCCTAATGGAACACAGTCCAGGAAATAGGCTCTACTTAGGAGTTAAAGAAGCAATTGGAGGCTTTGCTTATCGTCATCGCTCGAGAGGAATCAAGCTCTTAGTGCATTGAATACTTGGGAGACCGATGACTATCCCTGTGTCACAGTGGTTTCGACTCACTCAATCATATGCACTTCAACATACAGCGCATGCTTTCACCTTTTGCGTTCGCCTATTCTTCGGGAGTGCTTCCAGGATATGTTTTGATCACACACTTGCACACAGggtgagGACCTGCACAGGCTGTGCAGAGAGCTCACAGAGAGTGATGCAACCTGGAAGCTGCTGATATGCTGAAAAATAAAGCCAAAGAAAGGCCAGCCAGTGAActgaacaggagaggagacatggagtaACAGTGTCAGCCAGAGATAGAGCTTGTTAATGTGTTGCCATATACCATGACTGATTCCTTCTGACACAGTGTACGGTACCCAGAGATGTACGATTCCCGATAGTGCTGTGTAAGCTATTTTACAAAGGGCCGTATAGCAGGTACAGAGACATTGACAGTGTTGGATTCACTGACTGTCAGGGCATGGATGAAGACAGATAGATGGCATACTGAAGATAGATGGCAAAAGACTGTTGAACACGGGCTAAATAACACTGGATGCACCCTTACAGTTGGCAGTGGATGAGCACGGACAGATAGAATTGGGATTGGCTGATACAGACGGAGAACGCTAGAGCTAGATGAGCTACTGCAGATAGCAGTGCAGATCCACTGTTAGCGAGCTAGCGCAGGCAGGGAGTGGGAGGCTTAGCACCATGAACCCcagagagagcggaggaggaggagtggaggccATGGAGACTCAGGCGGGAGGgctggaggtgggggaggagggaggcaaAGCCAGCCAcggaggagatggagaagagggggaagaagacAAGGCCTCAGCCTACGACTGCAACGTGTGTGGCCGCAGCTTCCCCTTCCAGAGCTCTCTGTCGCAGCACATGCGGCGCCACACAGGCGCACGTCCCTACAAGTGCCCCTACTGCGACCACCGCGCCTCCCAGAAGGGCAACCTCAAGGTCCACATCCGCAGCCACAAGCTACGCACGCTCACTAGCCACCACcccgaggaggaggaggggccagaggaggaagaggacgggTCAGTTGAAGTGGGTGTGTCTGAGGGCCTGGACGGTGGAACCAGTCCGACGAAGAGCAGCTCGGCCTGTAACAGGGTCGTCAACGGAGACGCTAACACAGAAGAGGGCATAGGGAAGACGGCGGTGAGGAGCGTCAAAAGGGAGAAGTCGAGCTCTGAGCAGCGGCCATATTGCTGCCGTCTGTGCGGGTACCAGACCCAGCGCGAGGACCAACTCCTCAGTCACATCGAGAAGGTCCACATCACAGCCGACATGGAAGACGAGACTAACCCAGTGAGTCAGGAGGCAGTGGCAACGGAGGGAGAAGCAGGGACTCAGGTCACTGATGGTGCCTTCCCCTGTGAGACGTGTGGCCAGGTGTTCACACAGGCCTGGTTCCTTAAGTCCCACATGAAGAAACACGCAGGCCTCCTTGAGCATTGTTGTCGGGTGTGCGGCCGCCGCTTCAGGGAAGCCTGGTTCCTCAAGAGCCACATGAAGACCCACAATGGCTCCAAGGCCTCCGGCCGGGGGAAACCCAGGGCAGACTCCCAAGAGGCCGCGGCCACCATCAACGACGTGGCCCAAGACCCAGAGACCAATGTGACCTCCACAAGCCTTTACCAGGTTTGCTCCAAGTGTGGAAACCTGTTCCATGACCGAGAGAGTCTGAAGGCCCACGAGAAGATCCACAGCCAGGCTAAGCAGCTGACACAGGGCCAGAGAAGACCTAGCGATAACGGGGACTCTCTCGGTGCCAAAAGGCGCCTCCTGGACTACCTCAACCTCCGGCCAGCTGTCGAAgtaaaaccccaggaagagaagaggCGCTTAGGCCAGAGGATCCCCGAGCTGGACCCAGTTTGTAGCTACCAGGCCTGGCAGCTGGCTACGCGGGGCAGGGTTCTTGAGCCTGTGGAGGCATACAGTATAAAGGCAGGTGGAGAAGGGGATGAGGTCCTGGCTGGAGGGACTGTGGTGTATGAGAAGGAGAGCAGCCACTACATCCTGGAGGGCCAGCAGAGGGAGCGACGTTCAGGGAGACGCAGCAGCGCCAGCGGGGGAGGGGGTAGTAGCCACCACACCTCCCCTGGGGAGCACACTCCCGAGAGCCTGAGTGACTCGGAGTACCGTCCCTCCTCCCGCCAGGGCCGACGTTCCTCCTCTTCCCAGCAGAGCCAGTCCAAGTCCACCGAGTGCTTTGAGTGCGGAAAGGTGTTCCGCAGCCGCCACCAGATGATTGTGCACCAGCGGGTCCACCAGAGGCGAGACGGGGGCAGGGGTTCCGGGTCCGGAGGGGACAACAGGGCAGGGCAAGGAGGGGACCGCTGGGGATCCACCAGTGATCCCGAATCAGGCTCCCCTAGCAGGCCCAGCAACCCAGGGTACGGGAACTCACCACCAGCCTCCACCCTGGGAGAGGACGCCCCTGAGATGGGCACCGCCAACGCAGTCCCACTGACAGATGAGAAGCCTTATGTCTGCAGCCTGTGTGACTTTGTCAGCACAGAGTCCTCTGCCTTCCTGTCCCATCTACGTCTCCAGCACACCAGTGACGGCCGACCTATTCCCGACCCCAGCTCCAGCTCTGAGAGAGGCACCCCCAGTAGCTTCCCAAAGCTGAAGAGGGCTCTCCTCCACGGGCTTGCTCAATCCTCTGCCCCCCACCCTTACCTCTCTGCCCGACCGTCGAGAGACAAATGCACCGCCGAGAGCAGTTCACCCACTGACTCTCACCGTGTTGCTCCTCTGGACTTGTGTGTGAGAGCCGAGGGCCACAGGGGCCCGGCCTCCTCAGCTCTTCAGCAGAAGGGCCTGCCCAGTCATAAGTGCTCCTACTGCTCCCACTCCACCCACTACCTGGAGGTGCTGTGGATGCACCAGACCGTTGCCCATCGCATCAACAGCAGCGCCCTGGCCCCCAAATGGGCCCTCCTGAAGAATAGCTTCAAGGGCCCCCGAGAGGGCTCGTCCTCCAGGAGACGCACGGGCCCTCCTCCCGCTCTGGATGGGAGGGAGTGTCCCCCTTTGCCCCCTGTGGTGCGCACCCCCCGGACACGCCCCCCATCGTTGAATGGGGGCCAGAAGAAAGACAGCAGGGACAGGGCAGCCAGTCAACCcagctcttcctcctcctcctctgcctcagGCCCCCAGAGTGTGCGGCCTCCCAGGGCAGGCAGCAGCAGACAGAGAGGCGAGGCTGTGCCGGATCATGGCCAGCGCTCTCGCTCCAACTCTAGGCCCAGGGTGGAGATCTACCCACGTGGAGGCTGCTCGACCAGCTCCCTGGAGAAGAGCACTGCAGCCGGGGCTCCCCAGCAACCCTCAGCCCCTAGCCCCAGTGTCGGAGGAACTACCAGGCTGGTGGAAAGGTACATGTTGCCTCGGGAAGGCCTGGGATTCATGCTGTCCAGCAAACATGGCCttgcagagtacagcagagcCAGGAGCTCGCCTCAGCCCCAGCCCAAGCCCAAGCCCAGGAGCTCCCAGTCCCACACCCAGTCTCACCCACAGTCCCAGGGCAGACCCAGGGCAGAGCGCCCAGCCCACAACACCACCACGGCAGGCCAGGGCTATGGAGCCTCCCACTCCCAGACACATGGGAGCGCCGTCCAGatatcctccacctcctcctcctcagcccaGCGTGTGGAGGTGAAACAGGAGGAGGCACGGGGGGTGGAGACACCAGATCTGCCCATGGACATCCTCAGCTTCCTGAAGAGCTGCAACTCCAATGACCTGGCGACACTCTACCACCGCTGGGGCGCCGCCAACCCCCTACTGGACCCCACAGgGATGCTGAGGCCTCTGGTTCGACAAGGGGAATACGGCTGCCAAGAGTGCGGGAAGAGCTTCAGTCAGCCCAGTCACCTCCGCACACACATGAGATCCCACACAGTCGTGTTTGATTATAACGGACTCCGAGGTGCTGACGCTCAAACCAACTCCTCGGAAGCTCCCAAACAAGGGAGAGACCGTTCCGATGCCGCCTCTGCCCGTACCGAGCCTCTCAGAAAGGGAACCTGAAGACCCACGTCCAGAGTGTCCACCACGTACATTTCGACAACGCCCAGTACCCTGATTACAGACCACCGGGACTGGACCACGATCAGGAGGAGGAGCCGGGAGACTGGTTCTCACCCAACACCACCGACCCACCGCGACCTAATAACAGACCCACCAACGTGACATCCCCAGGGCCTAAGATAGAGCTGGAGACTCCATCCATATTCCCAGCCCCTCcccacagacagcagagagaactGAGAGCTGTGTCAGAGACACCACCTGACAGAGTGACATCAGCGTGAACTCCCCCCCGTTGTCGTTTTGGCTTGAAATATTACCTGGATTATTTGAAATGtgttt

Function

GO: NA

KEGG:

id description
K22411 ZNF516; zinc finger protein 516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280444 lncRNA downstream 85987 31283008 ~ 31283293 (-) True G245688
TU280262 lncRNA downstream 163508 31205559 ~ 31205772 (-) True G245516
TU280261 lncRNA downstream 164240 31204585 ~ 31205040 (-) True G245515
TU280248 lncRNA downstream 195542 31173244 ~ 31173738 (-) True G245502
TU280219 lncRNA downstream 211450 31157020 ~ 31157830 (-) True G245475
TU280533 lncRNA upstream 15621 31434515 ~ 31440678 (-) True G245774
TU280549 lncRNA upstream 48219 31467113 ~ 31467327 (-) True G245790
TU280550 lncRNA upstream 49081 31467975 ~ 31468320 (-) True G245791
TU280557 lncRNA upstream 53438 31472332 ~ 31472554 (-) True G245798
TU280725 lncRNA upstream 53733 31472627 ~ 31473028 (-) True G245937
XM_021595958.2 mRNA downstream 205804 31158426 ~ 31163476 (-) True LOC110518336
XM_021595923.2 mRNA downstream 436120 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 485722 30881668 ~ 30883558 (-) True LOC110518189
XM_021595877.2 mRNA downstream 485723 30881668 ~ 30883557 (-) False LOC110518189
XM_036973841.1 mRNA upstream 143490 31562384 ~ 31581203 (-) False LOC110518371
XM_036973842.1 mRNA upstream 143490 31562384 ~ 31581203 (-) False LOC110518371
XM_036973843.1 mRNA upstream 143490 31562384 ~ 31581203 (-) False LOC110518371
XM_036973844.1 mRNA upstream 143490 31562384 ~ 31581203 (-) False LOC110518371
XR_005043155.1 mRNA upstream 143490 31562384 ~ 31631107 (-) False LOC110518371
TU280109 other downstream 423437 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 1151691 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 1152168 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 1169510 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 1191872 30174013 ~ 30177408 (-) True G244379
TU280776 other upstream 143651 31562545 ~ 31581202 (-) False LOC110518371
TU283202 other upstream 2000535 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 2938381 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3470612 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3477064 34895958 ~ 34896296 (-) True G249990

Expression Profile