RNA id: XR_005043161.1


Basic Information

Item Value
RNA id XR_005043161.1
length 2687
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110518371
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 31562384 ~ 31631107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTACCTAAAACAGGAAGCAACgagacatacatttttttttacgaaGGCAGTCTGTGAAAACAACGTCAAAACCGTGGAAGAAAAAACTTGTCCACGAGAAGAGAAACTACACATCAAAATCACAGCCTCTTATTGTGGATGCATTTGATTCAATCGAAACGGAGAAGGTCTCTGTTGACAAAATGGGACAGCATCTAGGAAAACGCGAGCCACAGCCGCAGAGCAAGCCTTCGTCACCAGAAGCAGAACAGACCATAGAACCAGCACCCATTGGTGAGATCATGGCAGAACCCGAATCACAAGATGAGGTCTTTGGCCTGGGTGAGGCAGATGTGAACCCGAACAATGGCTGCCCCTCTGAGAAGGCGTCGGCGGCGACTGACTCCACGGGCACTGAGGGGCCCAGCAGCTCCTGGAACGAGGCCAGCACAGCTGATGCTGACGATAGCGCCACGCCACGCCCCCACCTGGTCCGCCTCTTCTCCCGAGATGCCCCGGGCCGTGAGGACAACACCTTCAAAGACCGCCCTTCTGAATCGGATGAGCTACAGACCATCCAAGAGCACAGCGGAGCGGGATCAGAGTGCGGTTCAGAGGATCAGGATCTAGACTAAGTTTGTTTCTTTGCCCTCCCTTTCTCGATCTTTAATACCCCCTTCGCTCTTACCTGAGAGACCGAACCCCACTTACAGAGATACTAGCAGCATTACCCAACCCTAACCACCGACATGGCAACTGCAAGCTCCTCTGGACTGTCTAGCCTGGGAAGGAAAAAGAAGGCCCCTGGCCTTATGGATCAAATTGGGAACTTCTTTGGAGGGGACAAGAAGAGGAAGAGCAAGGGTTCTTTCCGTggcctgtcctctcctgtcagacCTACCAAGGCAGCCCCTAAGGGTGGGGAGAACGCTGTTGTGCGCCTCTTCAGAACGATCGTGTCCCCTGCCCCTCCTAAGTCTAGGAAGTCAACAGGATCCGCCAAGGCGAAGAAGGCCGGTGCAGGCGACAGCGGAACCCTGTCCAAGATCTTCAAAATGGGCGCAAGCCGGACTGGGTCCCTAACCAAAAAATGAGGTCCCTTTCAAGAGCACAAAGGCAGACGTCAAGGAAAGGGACACGAGTGGGGGAAAACAAAGAAGATAAAAGAACAGATCTTTgtcgactcacacacacacctcttccctGCTTTTCTAACCCGTTCATTTTATAACTCAAATGCCTCCGCCACCGCACCCGGCTGGTAGACATAGCGACACAATCTGTGCCCCTGCTCCTCCCTCCCGCCTCTCCTGTGCAACCATCTTGGATGTGAACTGTTGCCGAAGTCATCCGGACCCCCCTCTCACAGCCTAAAGGACCCCTGTCGTAGCTCTACAGTACCTGTGTCTTCATttctatttctctgtctgtctgtctgtctgtatagagtCGTCTAACAAGGCTGGCTATCTGGACCAGACCTGGCTGAAGTAGCTTAGGTCCAATTGACCTGGCCCTGACCGCCTGTGGTTGTGAAAGTGTGAccaggtctggttctggttcagAAACGAATGATTATCTGTCTTGTCATGCTCGTCTTTGTCgttccccccccccaaaccccacACACTCTCCCATTTCCTGTACAACCTGACATGAATTCATAGCTAAGCATCGTCTTACTAAGCTTGCATGGGTTGTTGCGATGGCCAGTTGGCCATGTGTTTGTACGTCTTTACCGTCCCGTGGCATCAGTGTGAAGTGTCCTGTCTTACGTGTTGCTGTCCTTCCATGTTTTTACATTAGGGTCTATGGCTGGCTGTGATCTTCCGTGGTAAAATGACATCGAGCTACTGAAAGTTAACCCACTAACAGTCTCGCCTGTAGTATCCACTGAATTGTAGAAATCAATGGATGATGTTATAATTTCTAATATTATTCTCATTAGATTTTCAGTACATGTAGATTGATTAGGACACTAATGTGTATGGGATTGGGAGTTTCCCCATCTAGATATAATGGAGATTTGTCTAAAATGCACTGTTTTGACCTTTGAAAAGCAGACACGGACTGCTCTGAAACCAAGCTCACGCTGGACCTGCCACAACCATGGCATTTCCAATGGCAGGACAGATTCAAACCCTTTCCCCCCATTAGGTGTGGTCTTCTCTGTCTTAAGTATCTCTTGCTTCATATATCTATCGAAGCACTGCACAAAATATGAATACAAAACAGCTAGCTAAGCAATACCATTTCTGACTGCCAGAAACGATGTGCTGTGTTTACTCCATGTGGATATTAAAACACCAACACTGTCATAAAGGTGCTCCTTATTTAACTGTGTAAAAGCATAaatgttataaaaaaaaaagatacagAGGGCGTGGAGTTTGTTGACCAAGGTACGAGCGATGAGTTGCATAAAACTGCTTATTACTGCCACTGTACTGTCCAATATCCTCCCACCAGTCTTTCCTCCATAAATAAAAAATTTGTGTAATCTATAGCATTctctgcctgtctccccctgtcacCCCTCCCCCATGTCTTAATGTGCGCGCGTGTTTTTGTATGGGTCCTGTGAATGAATGTAGAATGAAACTCTCGAGACCCTCATTGTTGTATCTATCGGTAATAAAAAGATGTACGACCAGCCACTTAATAACTTGGAAAAAATAAAGGAATTAAAAATCATTAAATCGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280726 lncRNA downstream 89057 31473126 ~ 31473327 (-) True G245938
TU280725 lncRNA downstream 89356 31472627 ~ 31473028 (-) True G245937
TU280557 lncRNA downstream 89830 31472332 ~ 31472554 (-) True G245798
TU280550 lncRNA downstream 94064 31467975 ~ 31468320 (-) True G245791
TU280549 lncRNA downstream 95057 31467113 ~ 31467327 (-) True G245790
TU280872 lncRNA upstream 57687 31688794 ~ 31695707 (-) True G246074
TU280879 lncRNA upstream 73760 31704867 ~ 31705284 (-) True G246081
TU280888 lncRNA upstream 82938 31714045 ~ 31714280 (-) True G246090
TU281004 lncRNA upstream 140738 31771845 ~ 31775282 (-) True G246205
TU281043 lncRNA upstream 191052 31822159 ~ 31822378 (-) True G246238
XM_036973838.1 mRNA downstream 143490 31369280 ~ 31418894 (-) True LOC110518297
XM_036973837.1 mRNA downstream 143491 31366522 ~ 31418893 (-) False LOC110518297
XM_021595958.2 mRNA downstream 398908 31158426 ~ 31163476 (-) True LOC110518336
XM_021595923.2 mRNA downstream 629224 30930661 ~ 30933160 (-) True LOC110518255
XM_021595883.2 mRNA downstream 678826 30881668 ~ 30883558 (-) True LOC110518189
XR_005043233.1 mRNA upstream 328936 31960043 ~ 32004356 (-) False LOC110518398
XR_005043227.1 mRNA upstream 343250 31974357 ~ 32004356 (-) False LOC110518398
XM_021596037.2 mRNA upstream 610560 32241667 ~ 32246399 (-) False LOC110518433
XM_036973845.1 mRNA upstream 610560 32241667 ~ 32246402 (-) False LOC110518433
XM_036973878.1 mRNA upstream 623639 32254746 ~ 32287276 (-) False macf1b
TU280109 other downstream 616541 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 1344795 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 1345272 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 1362614 30199232 ~ 30199770 (-) True G244381
TU278995 other downstream 1384976 30174013 ~ 30177408 (-) True G244379
TU283202 other upstream 1788322 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 2726168 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 3258399 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 3264851 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 4509005 36140112 ~ 36144572 (-) True G251462

Expression Profile