RNA id: XM_021596135.2


Basic Information

Item Value
RNA id XM_021596135.2
length 1702
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110518684
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32268649 ~ 32271705 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCAGCCACAGCTCACATCGACGAGGAAGGAATAGCACAGACGATCCCTGTGTGTGAAAAAGAATGGCTGCCAGTTTGTCTCTCTTGGAGGAGCACCTCTCTTGTCCCGTGTGCTGTGACATCTTCAGGAACCCTGTGGTCCTGAAATGTAGCCACAGCTTCTGTGAGGAGTGTCTGCAGAAATACTGGAAGGATATGGAGAATCCGCTGTGTCCTGCATGCAGGGCAGAGTGTTCATCTGAGGAGCAGGGTTTAAGCCTCGCCTTAAAGAGTCTCTGTGATTCCTTACAGAAGGGGGGTGAAAAGATCAGATCTGATACCTGCCGGCTGCATGGAGAGAAAATGAAAATCTTCTGTTTCGATGATAAACAGCCCATCTGTGTTGTCTGCTACACATCAAAAAAACATAAAGGTCATACCTGTTATCCCATTGAGGAGGCTGTGCCGGATTTGAAGAGTGAAATTCAGGCTGTGGTTTCCACTTTGAAGAACAAACTAGCAAACAGGAATGCAGCCAAGATGGGCCATCAAAGCTGGGAGGAGCACATCAAGGGCCAGGCCCAACGTGCAGAGGAGCAGATAAGGAGGGAGTTTAAGAAACTCCAGCAGTTCCTAGAAGAGGAAGAGACGGCCAGGATAGCTACCCTGCGAGAGGAAGAACAGAAGAAATCTGAAGTGATGCGAGAAAGAGCCGAGACATTAGCCAGAGAGATCACAATCCTTTCAGAGACAGTTGTAGCTGTCGATAAGGAAATGGAAGTGGACAACATCACATTCCTCAAGaacTACAAGGCCATACTTAACAGAGCCGACTGCACATTCCCAGATACTGCAGATACTGAGGTAGTATCAGGAGCACTGATTGACATGGCCAAACATGTAGGATCTCTCAAGTTCAAAGTTTGGGAGAAGATGCTTGAGTTTGTTGACTACACTCCTGTGATCATGGATCCGAACACGATGTCCTCTAAGTTCACCCTCTCTGATGACCTCACCACTATGACATACTGTGACGAGAGGCAGAGTCTCCCAGACAATCCCGAAAGGTTTCTTAACGTAGGAGTGTTGGGTTCTGAAGGGTACAGTAAAGGCACCCATTACTGGGACGTGGACGTCGGAGATAATGATAACTGGATCTTAGGAGTAGCCAAAGAGTCCATTCCACGCAAGACTCAGGTCAAAATGGAGCCTCGGAGTGGGTTGTGGATCATCAAATACATCTGTGGGAAATACAAAGCAGGTATAAAATCATACGTCCAGATCGTGGTAGACGAGAGCCCACGAGTGATCCGAGTACAACTGGACTGTAACAGAGGGGAGGTGAAATTCTTTGACCTCACCAAGAACACGACCCTGTGCACCTTCAAAGACAAATTCACTGAAAAGATGTTCCCATACTTTAACAGTGGAAGTGGGATTTGCCCACTACGCCTTTTAGGAAAGGCAAAAACTGGCTAAATTGCCAGGGTCAAGTGAGGACAAAATGTACTAACATAGGAAATTATGTAATGACTTCATGTACTGACTAGCTGGAGGGTTGTGAAGATAGTTAATGACTCAAACTCCATGTAATTAACAGTAAAACTCGCCTTTGATATAAGACACACTGCCATCTCAGAAGTAATGAACAAGTGTTTCAAGCAGTTGATACAGTATATTAAAAAATGCAATGTCagtaacacaaataaataatatatGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281449 lncRNA upstream 159462 32108974 ~ 32109187 (+) True G246619
TU281353 lncRNA upstream 233674 32034666 ~ 32034975 (+) True G246524
TU281313 lncRNA upstream 255063 32013330 ~ 32013586 (+) True G246497
TU281310 lncRNA upstream 258879 32009504 ~ 32009770 (+) True G246494
TU281227 lncRNA upstream 262581 32005862 ~ 32006068 (+) True G246413
TU281695 lncRNA downstream 196421 32468126 ~ 32468511 (+) True G246845
TU281700 lncRNA downstream 201672 32473377 ~ 32473668 (+) True G246850
TU281701 lncRNA downstream 203441 32475146 ~ 32475346 (+) True G246851
TU281702 lncRNA downstream 203749 32475454 ~ 32475761 (+) True G246852
TU281703 lncRNA downstream 204992 32476697 ~ 32476949 (+) True G246853
XM_021596024.2 mRNA upstream 38932 32150619 ~ 32229717 (+) False LOC110518416
XM_021596031.2 mRNA upstream 38932 32152874 ~ 32229717 (+) True LOC110518416
XM_021596015.2 mRNA upstream 244107 32007036 ~ 32024542 (+) True LOC110518407
XM_021596003.2 mRNA upstream 608029 31650612 ~ 31660620 (+) True LOC110518390
XM_036973840.1 mRNA upstream 710066 31473284 ~ 31558583 (+) False LOC110518348
XM_036973882.1 mRNA downstream 376706 32648411 ~ 32711431 (+) False LOC110518706
XM_036973883.1 mRNA downstream 376706 32648411 ~ 32711431 (+) True LOC110518706
XM_021596172.2 mRNA downstream 499370 32771075 ~ 32777409 (+) False LOC110518733
XM_021596180.2 mRNA downstream 579204 32850909 ~ 32852805 (+) False LOC110518743
XM_021596186.2 mRNA downstream 579243 32850948 ~ 32852805 (+) True LOC110518743
TU281088 other upstream 409330 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 588009 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 643606 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 1142382 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 1181394 31086769 ~ 31087255 (+) True G244991
TU282359 other downstream 500065 32771770 ~ 32775787 (+) False LOC110518733
TU283088 other downstream 1152084 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 1556515 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 1556515 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 1702771 33974476 ~ 33977835 (+) True G248794

Expression Profile