RNA id: XM_021581911.2


Basic Information

Item Value
RNA id XM_021581911.2
length 1573
RNA type mRNA
GC content 0.51
exon number 13
gene id if36
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32596856 ~ 32638124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGACGCTGATTGGTCAAATGACGTAACACGTTCGCGCgtctacttcctcctctctcgCGGTGAAAATGGCGGAGTACGACCTCACCACCAAAATTGCCCATTTTTTGGACCGACATCTCGTCTTTCCTTTGCTGGAATTCCTTTCTGTCAAAGAGATCTACAATGAGAAAGAATTGCTTCATGGAAAATTGGATCTCCTTAGCGAGACCAACATGGTGGACTTTGCCATGGATGTACACAAAAACCTCTTCCCTGAGAAAGAGATCCCCGCCACCCTAAAAGAGAAGAGGATCACTGTGGTGGCTCAGCTGAAGCAGCTGCAGGGTGAGACCGAGCCCATTGTGAAGATGTTTGAGGACCCAGAGACCACTAAACAGATGCAGTCAACCAGggATGGACAGGCCCTTTTTAACTATCTGGCGGAGAAACACAGCTTCCGTCAGGAGTACCTGGACACTCTGTACAGATATGCCAAGTTCCAGTACGAGTGTGGAAACTACTCTGGGGCTGCCGAGTACCTCTACTTCTTCCGTGTCCTGGTCCCGGCCACAGACAGGAACGCCCTGAACTCCCTGTGGGGGAAGCTGGCCTCTGAGATCCTGATGCAGAACTGGGAGGCTGCGATGGAAGACCTCACCCGCCTTAGGGAGACTATCGATAACAACtCGGTGAGCTCCCCCCTCCAGTCTCTTCAGCAGAGGACCTGGCTGATCCACTGGTCCCTATTCGTCTTCTTTAACCACCCCAAAGGCAGAGACAACATCATTGAGCTCTTCCTGTATCAACCCCAGTACCTCAACGCCATTCAGACCATGTGCCCACACATTCTGCGTTACCTGACCACAGCTGTCATCACAAACAAAGACGTTCGCAAGCGGCGGCAGGTCCTGAAAGATCTGGTCAAGGTCATACagcagGAGTCCTACACCTACAAAGATCCCATCACAGAGTTTGTGGAGTGCCTGTATGTGAACTTTGACTTTGACAGCGCTCAGAAGAAACTGAGGGAGTGTGAGTCGgTGCTTGTGAATGACTTCTTCCTGGTGGCTTGCCTGGAGGACTTCATTGAGAATGCCCGTCTGTTCATCTTTGAGACTTTCTGCAGGATCCACCAGTGCATCAGCATCAGCATGCTGGCAGACAAGCTGAACATGACCCCCGAGGAGGCGGAGAGATGGATTGTCAACCTTATCCGCAACGCCAGGCTGGATGCCAAGATAGACTCCAAACTGGGTCACGTGGTGATGGGGAACAACGCTGTGTCGCCGTACCAGCAGGTGATTGAGAAGACAAAGAGCCTGTCCTTCAGGAGCCAGATGTTGGCCATGAACATCGAGAAGAAGATGGCCCACGCCAGCAGGAACGAGaCACCCAACTGGGCAGGTCAAGAGACTGGCTTTTAGCAAGACACCACTGAGAATATTTTTATTCCTGTTCCTACACAGCATTCCCATCCAGCAACAACATCCTGTTTTTTTCTGCTTGTCTCTCAAGGAGCagaggatttatttatttttttgctcttgGTTCAAGTCATCAGTGATTCAATAAAACAGACGTGCAAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281946 lncRNA downstream 115195 32481305 ~ 32481661 (-) True G247084
TU281941 lncRNA downstream 122378 32474243 ~ 32474478 (-) True G247079
TU281937 lncRNA downstream 125685 32470895 ~ 32471171 (-) True G247075
TU281934 lncRNA downstream 128309 32467733 ~ 32468547 (-) True G247072
TU281932 lncRNA downstream 131610 32464993 ~ 32465246 (-) True G247070
TU282217 lncRNA upstream 58019 32696143 ~ 32697132 (-) True G247332
TU282267 lncRNA upstream 74383 32712507 ~ 32712707 (-) True G247379
TU282288 lncRNA upstream 88214 32726338 ~ 32726630 (-) True G247400
TU282299 lncRNA upstream 98916 32737040 ~ 32737682 (-) True G247411
TU282301 lncRNA upstream 100734 32738858 ~ 32739120 (-) True G247413
XM_021596144.2 mRNA downstream 2361 32513177 ~ 32594495 (-) True LOC110518696
XM_021596088.2 mRNA downstream 136841 32299848 ~ 32460015 (-) False LOC110518458
XM_021596093.2 mRNA downstream 136841 32299848 ~ 32460015 (-) True LOC110518458
XM_021596102.2 mRNA downstream 159651 32299848 ~ 32437205 (-) False LOC110518458
XM_021596110.2 mRNA downstream 159651 32299848 ~ 32437205 (-) False LOC110518458
XM_021596165.2 mRNA upstream 119569 32757693 ~ 32760895 (-) True LOC110518723
XM_036973888.1 mRNA upstream 368044 33006168 ~ 33013361 (-) True LOC110518755
XM_021596247.2 mRNA upstream 403549 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 639858 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 648088 33286212 ~ 33286264 (-) True LOC118964365
TU280776 other downstream 1015654 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 1651013 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2379267 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2379744 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2397086 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 781305 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1719151 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 2251382 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 2257834 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3501988 36140112 ~ 36144572 (-) True G251462

Expression Profile