RNA id: XM_021596172.2


Basic Information

Item Value
RNA id XM_021596172.2
length 2959
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110518733
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 32771075 ~ 32777409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACGCTGTTTGGAGCTCTGTGCGTAATGAGAAGGCTGTCTTAGACTGGAGCAGCGCACGACATGTCACACCTCTTTACTTTACCTCTTTGCTTATACTGTCAGTTTGCCTAACTTCGTGTCTAAAGAGGACTAAAACATGGGTAAACAACACCAACATCCAAACCTGGTCTTCGTATTCATCGAATATATTTTGCTCGATTTTATATGATATATCGCTTTCATAACCTCATGAAatgatttacattttattttggatAAGTAATACAAAAAACTTTATTGAATAATGACTTCGTTTTGGaactaatatttttttttaatggagcTCTCGAGGCTATTTTAAATGTAAAGTCTATGTCTGAAATGAATTACTCCTCCAAGTGAAGTGTACAGAACTAAACCATGGAAAATGTTACTTCATATCCAGATAACCAGACGCTTGGTCCATGGACTGATTATAGCATGGAATACAAAGTGGTCAGCATATTTTTTGTGATCCTCATCTGTGGGATAGGAATAGTTGGAAACGTTATGGTGATACTAGTTGTTCTTACAACCAAACACATGCGGACACCCACCAACTGTTACCTGGTGAGTTTGGCGGTGGCCGACCTGATGGTTCTGACTGCGGCGGGACTGCCGAATATTACAGAGAGTTTGTATGGAGGAGGCTGGGTGTACGGATACGTCGGGTGCCTTAGCATAACTTATTTCCAGTACTTGGGCATCAACGCGTCTTCATGCTCCATCTCCGCTTTCACCATTGAGCGGTACATAGCCATCTGCCACCCCATAAAAGCGCAGTTTATGTGCACTCTGTCAAGAGCAAAGAAAATCATAGTGGTCGTTTGGGCTTTTACCTCGCTCTACTGCGCCTTGTGGTTTTATCTGTCTGACACGAAAGAGTTGATTTACGACAATATTACCTTGGTCTCATGCGAATACAAAGTGTCAAGAAATCTTTACCTGCCAATCTACTTCACTGACTTTGCAGTGTTCTATGTGGTGCCTCTCATGCTAGCCACTGTTCTGTATGGATTTATCGCTAGAATTCTTTTCCTCAACCCATTGCCGGCAGACCCCAAGGAAAATACTAAAAAGTGGAAAAAAGAATCATGCCAAGGAAATAGGATGATGAGCACCAACAATTCATCCTGTAGCACAACTGCCCGATCTCGCAGGCAGGTGACTAAGATGTTAGCTGTGGTGGTGGTGCTCTTTGCCCTCCTCTGGATGCCCTACCGGACGCTGGTGGTGGTAAACTCCTTCCTGGACAAGGCTTACCTGGACCTCTGGTTCCTACTCTTCTGCCGCATCTGCATCTACCTGAACAGTGCCGTCAACCCGGTCATCTACAACGCCATGTCTCAGAAGTTCCGCACCTCCTTCAAGAAGTTGTGTCACTGCGGTCCGCAGCGATTGGAGAAGCCGGCGTCTTACAGCGCGGCCCTGACCTACAGCGTCATCAAGGACACAACCAATGGAGAGAGCCCTGACCACTTTACTACCGAGATGGACGAGTTGGCCACGCCCACACCCAGTGACCAGTTCCTGCCCAGCACCAAGAGGATGTCATTCGAGGACCCCTCTCTGTCATGCAGGGTTGCCCTTAGCACTCCCTGACAGAAAAAGTAAATCCATTCAGGCTCTAGTTTGTGAATTCTATTCTATAATTCATTTTCTGCAGAGGAATTGCTCTAATATTTCAGCAGTACAACGGCAAACATTAAATACCAAAAATGTGTTGTTAATAGAGGAAGGAATGCTTAATTTCTTTATCTAGCATGGTGAAAATAtattctcccctctctgtagCCATCTTAGCACAAAGCACCCAATTATAGGCATTGTTTAAATCAGTCTTAAACATTGTGTGACACACAGATTTAATTTTCCAGGTAATACTGCTTTCACTGCTTTCACATACTGAGCGACAGTTTCCATCTCTGTAGAGTGGAAAAAAGGGAAAGATATTATCCCTCTTTTTTTATCTGGAGAAGTCTAGGCCAggtactcagtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtttaaaaGTTCACTCTACAGGAGGAGTCAAACTGTCTGGCCATAGTTGTTTGAACCATCCTGCTACTTTGCATGTTTGAAAACAGCATAGAGAGAATGTGATCACTGACCACATTTCAAAGGCAAAATTCAAAGGAGGCAGAGTATTAAAACCATCTCTGCTCGAGGAGTGTAAATATCACACATTGCTTTGAAACCCGCCTGTCAGGGAAATAGAGATGAGGTGCGATGAAATTTCTTTAAAGGTTACAGATGATGAAAAGGACTGAGAGCAAAGCAATGCCACTCCAGGTCTTTCATCCGTTTGATTGCTCAATGTCATTTGACTTTGTTGTAACCTTATTGGTTACTATAAATCAGGCTCACCTGATATGGAACGTTCTGCAGGGGCTAGTGTCAAAAATGTATAGTAACCTTATGGCTAAAAGGTTCACCTGATATAGAACTTTCCACAGGGGCTAGTGTCAAAAAAATGGAGCATGGTTAAACATCCTGCTGTCCCCATAATGGACTACTGTGGTGTGGATTCAATCAAAAAGAGTTGAAAGGCCCAGAGTTCATAATGAGAAAGTTATTTGATGACTCAGACACCTGGGTGGTTGATTGGTTGTCTCTAGGTCAGGGGCCTGACATGACCAGACCAAACATTAAGTTGACATCCGCAAAAGCAGAGACTGATGGTAGCATTTCCCCCCAAGCACATCCCACAGAGCagctattcccaaactggggtacgcccaatgccgtcgggggtacgccaaataaaaaggTGATTCACAttgaagaaaaaagaaaaaaaaatcttcacattttcaaacagtccatttatattttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282290 lncRNA upstream 42103 32728685 ~ 32728972 (+) True G247402
TU282281 lncRNA upstream 48782 32722027 ~ 32722293 (+) True G247393
TU282280 lncRNA upstream 49278 32721532 ~ 32721797 (+) True G247392
TU282269 lncRNA upstream 57343 32713489 ~ 32713732 (+) True G247381
TU282007 lncRNA upstream 132887 32596856 ~ 32638188 (+) False G247131
TU282344 lncRNA downstream 2124 32779533 ~ 32779805 (+) False G247453
TU282351 lncRNA downstream 2429 32779838 ~ 32780564 (+) False G247453
TU282353 lncRNA downstream 2429 32779838 ~ 32780725 (+) True G247453
TU282385 lncRNA downstream 15925 32793334 ~ 32793537 (+) True G247481
TU282445 lncRNA downstream 58022 32835431 ~ 32835630 (+) True G247541
XM_036973882.1 mRNA upstream 59644 32648411 ~ 32711431 (+) False LOC110518706
XM_036973883.1 mRNA upstream 59644 32648411 ~ 32711431 (+) True LOC110518706
XM_021596135.2 mRNA upstream 499370 32268649 ~ 32271705 (+) True LOC110518684
XM_021596024.2 mRNA upstream 541358 32150619 ~ 32229717 (+) False LOC110518416
XM_021596031.2 mRNA upstream 541358 32152874 ~ 32229717 (+) True LOC110518416
XM_021596180.2 mRNA downstream 73500 32850909 ~ 32852805 (+) False LOC110518743
XM_021596186.2 mRNA downstream 73539 32850948 ~ 32852805 (+) True LOC110518743
XM_021596212.2 mRNA downstream 242002 33019411 ~ 33035356 (+) False LOC110518767
XM_021596219.2 mRNA downstream 242003 33019412 ~ 33035356 (+) False LOC110518767
XM_021596208.2 mRNA downstream 247208 33024617 ~ 33035356 (+) False LOC110518767
TU281088 other upstream 911756 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1090435 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1146032 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 1644808 31125406 ~ 31126267 (+) False LOC110518266
TU279677 other upstream 1683820 31086769 ~ 31087255 (+) True G244991
TU283088 other downstream 646380 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 1050811 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 1050811 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 1197067 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 1228749 34006158 ~ 34013057 (+) True G248795

Expression Profile