RNA id: XM_036973888.1


Basic Information

Item Value
RNA id XM_036973888.1
length 3073
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110518755
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33006168 ~ 33013361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTCAACAGTCTCCGCTCTTGTGTGAAGTCGAGGGCGCGAACGCACTTTTCTGGTGAGAAGGGAACGCAGAAGTCTAACTGACGCGCAGTCTATCTTCAGCTCTTGCTGTCTAAAATCGCTTCATTGTGGAGAGGGCTTCGAAACATCTTTGGGACACTATCACCATGGACGCATTTCAAGTACTATCGTTATATTTGTTACTCCTCTTCATTTGGAATATACCATGTTTTCAGTCAGCTGCCATCATTTCCCCCTCTATGCCAAGGAGAAACAAGGGAGTCAAGATACTTCATGATGGACAAAGGTCAACCACATTTCTCAAAGAGATCTTCGCATCTTCCCCTATGTTAAGCCGTCACCGAGAAGACTTTAATAAGGACGCAATTGTGCCCCACGATTACATGCTCTCCATATACAGAACGTATTCGGCTGCAGAGAGACTCGGACTAAACGCAAGTTTTTTCCGCTCCTCAAAGTCTGCAAACACCATAACAAGTTTTGTGGACAGAGGAACAGACGATCTCTTGCACTCTCCTTTGCGAAGACAAAAGTATCTGTTTGATGTCTCAACCCTTTCAGACAAAGAGGAGTTGGTTGGAGCTGAATTAAGGATATTTAGAAAAGTGCCCGGGGATTTGCAAACGTCCCCGACAGGTCTCTATGACATTCAATTACTCTCCTGTCGATCAGAACGGCTACTGGATTCCAGATCCCTTGATCCTCTCGATTCCCGAAAACCAGGATGGGAGGTTTTGGACGTGTGGGAAATGTTTAAAAACCGGCATCACTCTGCCCAGGGGAGCCAGCTTTGTCTCCAGCTCAAGGGTACTGTTGGTAAATCAGAAATGGAAATCGATTTAAAACAGATGGGATTTGACAGAACCGGTCGAAACCAGCAAGAGAAGGCCATCTTGGTGGTTTACACCAGGTCCAAGAAAAGGGAGAACCTGTTCAACGAAATGAAAGAGAAGATCAAGTCGCGCGGATCGGGGAGCAGgtcggaggaggagaggggcctGCGGTTCAAAGCCAGGCGCCGACGGAGGACTGCATTGAACAATCGGCATGGGAAAAGACATGGCAAAAAGTCAAAATCTAGATGCAGTAAAAAGGCTCTGCACGTTAATTTCAAAGAGCTAGGGTGGGATGACTGGATCATTGCGCCATTGGATTACGAAGCGTACCACTGCGAGGGCGTGTGCGACTTCCCTTTGAGGTCGCATTTAGAGCCAACTAACCATGCCATCATTCAAACTCTCATGAATTCAATGGACCCCAATAGCACACCTCCTAGCTGTTGTGTTCCCACTAAACTAAGTCCCATCAGCATTCTTTACATAGACTCGGGCAATAACGTTGTGTACAAACAGTACGAGGACATGGTGGTAGAGCAGTGTGGCTGCAGGTAGCGTCCTTTTCTTCTGCGACACTTGAACGTATTTAAACCCCGTAAAAACAAAGATAAGTCAGTCGGCCCAGGTCAGGATATGAAAGCTGTGGCATATCTTAAGCATATAGACCCATGCGTTCTTGCCATATCATGGTGCGCCTAAACTTCACTCAAAAGGGTTCCACGAGAGACATTATTTGCAGTGTGGGCCTATGCAAGCATATTTGTGTTGgtcacatttaaactcagtacaATCTCACATAGCCTTATCTGTCCAATTGTTGTGTTAAACTAATACATACTCCTAGTCTACATTGCCGTCCATATGATGTGTTTCTCAATTGCATAGTCTATTGTTTCGCGAAGCCCCGACATGGATAGACAGTTCGTTATAAACCATTAGTCCGCAGGAGAGGACAGGCTATCGACAGGCTAGTGATTTGTTCTTTTCTGAGCAGACTTGGAATTGTTGGTCTTCCATCAGTGAATTACGTCCGAAATGGGCACAGTGGAATGCACCTGTCCAAACTAGGCCGCAGTCACGGGATAGCCCTTGTGCATTGTTGCAGCTCCCTGCAGCGGTCTTGCAAAGAGGACTCATTTGTAGCGGGTGTTTCCAGGCTCACTGCCAGCATCCAGCTGAAACTATCGAGCTCTTCTGATGCGTTATCAATCGgccctagcccccccccccaccccctctctccaatgtctctctctcaaatatatttctctctctctctctctctctctctctctctctctctctctctctgtctctctgtctctctgtctctctctctccctccctttctctctccaaaaGGTGAATGTAATCTACCAAACACACAATGGGCTCTGAGGAAAAGAGATAACGCAGGTATGCCTACAAGAGATGTGTCTGTGCGCCCTGTTTCAACCGAATGGAGTGCGCGCTCGAGTCACCACAGCCGGCGGGAAACGAATGCAAGACTTTAGTTACCAGACGATTCTAAACATGGGCTCTATGGACATAGGCATTCATATTGTGCCTGTCATTTTACAGCTCACTGTATCTCGATGACTTGCTGAAGGCACACTGAAAGGCAGTTGGACCCGGTTGCGCACAGGAGCACGTGGGGACACCAGAGGCCAGGATAAATAATCAAGACAAACATTTGCTTCTCCAACGCATCTTACAAAAGGCACTTCCACAACTGACTGCGGCAATGTCATGTAGTCAGGAGGAACGCCTTTTTCGTGATAAATCGACTGACTAGAAAAGACTCGCAAACGAGATATTTAAATGCACATTAGCTTTGAATGCACTGCTGTTCGTTATTTGAGCTGTAAATATGTGTATAGTTAAAACTTTACAAGTGCAACGAATGAAGAAATGACTAAATGCATTTCTTTGTACATGTACATACTTTAAATGCACTCAAATCGTTATAATATCTATTCTATAATAATTTTATTAATTGTGATGTACAGAGTTTCATGATAATCATATATTTCTTACATTGATAAGAGTAATTTAAGCTGTATAAAAACTGTTGAGGGTGGAAATACCATTATTGATGTCTACCTCATAATTACCTAGGTTCTGAGTTCTGAGGTGCATTCAACTGTGTTCAATTCTTTTTAAATGATATATGAAATTATACATTTATATAGGccaatatatataatatatatatat

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0040007 growth biological_process
GO:0001895 retina homeostasis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K20012 GDF6; growth differentiation factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282723 lncRNA downstream 13733 32977539 ~ 32992435 (-) False G247795
TU282725 lncRNA downstream 13733 32977539 ~ 32992435 (-) False G247795
TU282726 lncRNA downstream 13733 32986358 ~ 32992435 (-) True G247795
TU282562 lncRNA downstream 74668 32931275 ~ 32931500 (-) True G247657
TU282535 lncRNA downstream 98240 32907722 ~ 32907928 (-) True G247630
TU282715 lncRNA upstream 6225 33019586 ~ 33021621 (-) True G247787
TU282781 lncRNA upstream 22839 33036200 ~ 33036500 (-) True G247847
TU282792 lncRNA upstream 34274 33047635 ~ 33048593 (-) True G247855
TU282808 lncRNA upstream 52483 33065844 ~ 33067704 (-) True G247868
TU282941 lncRNA upstream 198119 33211480 ~ 33211791 (-) True G247994
XM_021596165.2 mRNA downstream 245273 32757693 ~ 32760895 (-) True LOC110518723
XM_021581911.2 mRNA downstream 368044 32596856 ~ 32638124 (-) False if36
NM_001246326.1 mRNA downstream 368096 32596864 ~ 32638072 (-) True if36
XM_021596144.2 mRNA downstream 411673 32513177 ~ 32594495 (-) True LOC110518696
XM_021596088.2 mRNA downstream 546153 32299848 ~ 32460015 (-) False LOC110518458
XM_021596247.2 mRNA upstream 28312 33041673 ~ 33057433 (-) True LOC110518858
XM_021596260.2 mRNA upstream 264621 33277982 ~ 33284779 (-) True LOC110518882
XR_005051415.1 mRNA upstream 272851 33286212 ~ 33286264 (-) True LOC118964365
XM_021596266.2 mRNA upstream 287754 33301115 ~ 33337241 (-) True LOC110518895
XM_036973905.1 mRNA upstream 369619 33382980 ~ 33401872 (-) False ube3d
TU280776 other downstream 1424966 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 2060325 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 2788579 30211570 ~ 30217589 (-) False G244393
TU279014 other downstream 2789056 30211570 ~ 30217112 (-) False G244393
TU278997 other downstream 2806398 30199232 ~ 30199770 (-) True G244381
TU283202 other upstream 406068 33419429 ~ 33419707 (-) True G248239
TU284611 other upstream 1343914 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 1876145 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 1882597 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 3126751 36140112 ~ 36144572 (-) True G251462

Expression Profile