RNA id: XM_021596235.2


Basic Information

Item Value
RNA id XM_021596235.2
length 3641
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110518767
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33019411 ~ 33035356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGATAACGACCTTAGGGGTCAATTACGTCATTCTTGATGTAAAAAAGGAGAAGGCTAAAGACGTACACACTTACATAACCAACTCCTTTAAGCGATGATGCTAAGCGGCACAACattcaacaggagagagggaatggataAAGAATGGAGGTATGTTATAATGTGCAGTCAGGCATTATGTGAACCTTGAATTATTCAGCCGTCAAACATCAATAAAACATACACTTTTGTGCATGTACTGGTGCCTGGAGGCCTTTGCATGTCTAAGTCAAAAATGGAGAGGGTGAATTGAACTACCTGTATAGGGAATGTGAAAATTGATATACAACCCAAACATTGTACACTATTATTCTGTAATTCTTATCTCAATATTCAGTGAGCGGTTTGCCGGTGTGTTACTCTCTGGTGTCATCTATTTGGCAGGAAAAAGGCTCTTTGGCACAGGATCCCAAAAGGAAGAAATGATgtcatatttctgttttttttattttttatcttggcAGAATAACTCATGGCACTTAGTCAACCTCTTTCTTATAGATGTTTGAAGATGCTGCTGTCTGTTTTCCACCTGGTGGGACATCATTTAGAAATACATGAATAAATTAAGAGTTAGAACTGCACCCAGTTCCTATCTGCAGCGTCATTCACAACTAGATTTCATTTCAATTACATCGATACGTAATCGGATAATGCGTTTTTAGGTTGTTGCATTTTTCTGTGAAGGACAGTAAAGCTTTGGTTTTATTGGAAGTAAGAAACGGTCTCATGCCTTTGTTCCATGTTTGAGGAAATACATGCAAAATATTTTCAAGTATATTTTCCATCTGGTAGCCTATTTTTGATGTGGGTCTCACTGGTTTAATGACCAAGGTCCGGTCAGTGTCTGTGCCATCTGTGCCAGGCAGGGGTGGACGTGGGCGGGGGTGACATGATTTACATAACAGATTCCAGACAGAGTCGCCCCTTGTTCGTAAAGGGTTCAGTGCCAGTGTGCCACGTCATGATGCCTTGGACAGAAATACATCTCACCTAGTTTTACTTTTCTCACAGATCCAAAGGGGAAAAGGCAGCGTTAAGCACCATGGGACCATTCCAGGAATATGAGGAAAAGAAGTCGCCAGGGAAGGAGAGCCCCCGCAGCCGCATCCCACGCTTGATCCTCCATCCTTTCCAGCCTAATGAGAAAGGGTCACCCCTGTCCGAATCACCCATTTCAGAGGAGGAGGGTAAGGACTGTGACATCAGCTCGGACAACTCCAAACGGACCATCAGCACCAACAGCTTTTGCTCAGGCTCAGACAACAGTCCGCATGGCTCCCCCACGCCCACCGCCGAGTGCAAGACCAAGGTGAAGAGGGTGAGGGTGATGGAAGAGTGGCACGCACCCCCGGCAAGGCACAAGAGGGAGCAGCGATCGTCCACATTGCCCAGAGGTAGTGAGGCAGACTTCAGCTCCTCCAGCAGCACTGGCAGCCTAAAGCGAGGGGGGAGCCTGGCCCACAGCTCCACAGGGAAGAAGATCTCCTCACGCAGTCGGGGTGCCCACATCAGGAGCCTCCCTGTGTTCAAGCTGGCAGGGATCCCCTCAGCATCCCGTGATGCAGAGCTCTATGCCCCGTACAGGACAGttccctcatccaccaccaacagcagcagcaactcTAGCCCCACAGTACCCTCCAGGATGACCCCCAGAAGATACCACTCCTGTGGGGACAACCATGGCATCAGACCCCCCAATCCAGAGCAGTACCTCACCCCCCTGCAACAGAAGGAGGTGGCCATTCGCCACCTGAGGAGCAAGCTGAGGGAGGTGGAGAACACCGTCCACGACAGgGAGTCTGAGATTGAGAATCTCAAGTCCCAGCTGGGACGGATGAGGGAGGACTGGATCGAGGAGGAGTGCCACCGCGTCGAGGCACAGCTGGCCCTAAAGGAGGCACGAAAGGAGATCAAGCAGCTCCGGCAGGTTGTAGAGACCATGAAGAGCAGCCTGATGGAGAAGGACAAGGGCATCCAGAAGTACTTTGTTGACATCAACATCCAGAACCGCAAGCTGGAGTCCCTGCTGCACAGCATGGAGATGGCCCAGAGCGGCTCCACGCTGCAAGACGAGCCAACCATGGACTTCATCTGTGGCGACTCCGACTCCCCTGTTAACGACCAGCAGGGGGAGGTGGGTGACCAGGCGGTGGAGGAGATGGTGGACAGTGGGCTGCTGGTCAACGACAACCTGGAGCACGTGCTCATGTCCACGGCGGTGGACTCCAGCCACGACTCTAGCGGTAAGCTGCGCTGCCACCCAGAGGCTGGTCCGGGGGTGTCCACTCTACTCCACAGTCTGGAGGAGAAGGTCACACCACTGCCTTCACCACCCTCCAACACGTTCTGCTGCAGCACACTCCCCTTCCCTGCTCCAGAGGACAAGGCCGTTCAGACCGAGGTGGTGTCCTTCCCTCCTGACCTGCACACCCTCCTGCTGCACTTGCTGAAGCTCCATGGTGGTGCAGTTGGAGATGCTCTCCTCCCAGCTTCTACCAGCCTTCTAGAAATCCCAGCACTGCAGGGCCCAGCCTCGACCCCTCTCCCATCCAGCCCTAACCAGTCCACCTTAAGCCTGCCTAGCCCCAGCCAGCCCACACCAGTTTTGCCAGTGAGCCCTGACATGTCCAGTGATTCAGGCCTGTGTTGCTCAGACCCTGAGGTGATGGTCTCCATGCGCTTCATGGAGGAGCTGGATTTTGAGGTGAGCAGTGAGGAGCCCTGCAGGGCCCCCGAGATGGACGTGGTCAACAAACGCTATTGGAGCAGCAGCTTCCTTGTCGATCTTGTTGCTGTGGCCGTACCAGTGTTGCCCACGGTGGCCTGGCTGTATTCCCGGCATGGCGTGGATGGGGCGGCACCAGTCTACAACATCGCAGCACTGATCCGTGGCTGTTGCATGATGGGCTTGCACTCTCTCCGTCATGTCACTCATCATCATGGGGCAGATGTGTAACGAACGGCCTCTGACCCCTGCATGCACAGCCCGACCCCTCAACTTGAAGCACTTATACATCAGTTAATCAAAGAGTATTTGTGAAAATCTTTAGTTTTTCTACACTTGAGAATATTAAAGCTACTGTTATTAATTTAGGTTCCCACGCGGTTACTTTGCACTGTGTACAGTTGTTGTGAGTTATGTGAAATTTATGGTGAAGGGATTTTATTTACTTTCCATCTGTTCTGTTATCATAATTGTGTCTAAATGGATAATCTGAGTAGGTGGTTATGCATCATTGATGTCCTGGGCTGGCACTAGTTACCCCTACTTAAAGCAACTATGTTATTTTTCTGAAAGTATTAGGATTTCTGAGGGTGGGGATGAAATTGAATGTTAGTTTAAGCAAGCGTTTGTAATGGTTTATGTTCCCAAATCTTAAACCTGCAGCCAAAGCTTCATTAGTGAACGTTCACTCAATGTTTATTTTTCTACCTGGGAGTAGAGCTTTTTACGTACGTGTGTAACAAATTGTTGATGGGAGTATGAGCTCAATGCTTCGAAACATCCCATACTCGTTTGTGCCTGAGCTACTTTGTGTAATACTCTTAACATCAAATGTCCTAATATATTTATTAAAGCATGATAATCCAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282589 lncRNA upstream 30602 32991994 ~ 32994017 (+) True G247682
TU282587 lncRNA upstream 30979 32978569 ~ 32993640 (+) True G247681
TU282585 lncRNA upstream 32171 32977545 ~ 32992448 (+) False G247680
TU282586 lncRNA upstream 32171 32977545 ~ 32992448 (+) True G247680
TU282484 lncRNA upstream 132182 32892193 ~ 32892437 (+) True G247580
TU282933 lncRNA downstream 171328 33206684 ~ 33206889 (+) True G247986
TU282940 lncRNA downstream 176211 33211567 ~ 33211936 (+) True G247993
TU282953 lncRNA downstream 181753 33217109 ~ 33217352 (+) True G248006
TU282954 lncRNA downstream 182107 33217463 ~ 33217694 (+) True G248007
TU282963 lncRNA downstream 194348 33229704 ~ 33230060 (+) True G248016
XM_021596180.2 mRNA upstream 171814 32850909 ~ 32852805 (+) False LOC110518743
XM_021596186.2 mRNA upstream 171814 32850948 ~ 32852805 (+) True LOC110518743
XM_021596172.2 mRNA upstream 247210 32771075 ~ 32777409 (+) False LOC110518733
XM_036973882.1 mRNA upstream 313188 32648411 ~ 32711431 (+) False LOC110518706
XM_036973897.1 mRNA downstream 22540 33057896 ~ 33068611 (+) False LOC110518846
XM_036973898.1 mRNA downstream 22543 33057899 ~ 33068611 (+) False LOC110518846
XM_036973899.1 mRNA downstream 22543 33057899 ~ 33068611 (+) True LOC110518846
XM_036973900.1 mRNA downstream 51153 33086509 ~ 33172715 (+) False LOC110518871
XM_021596255.2 mRNA downstream 52347 33087703 ~ 33172715 (+) True LOC110518871
TU282359 other upstream 248832 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1165300 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1343979 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1399576 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 1898352 31125406 ~ 31126267 (+) False LOC110518266
TU283088 other downstream 388433 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 792864 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 792864 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 939120 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 970802 34006158 ~ 34013057 (+) True G248795

Expression Profile