RNA id: XM_021596255.2


Basic Information

Item Value
RNA id XM_021596255.2
length 1733
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110518871
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33086509 ~ 33172715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCATCATTCTCTTCTTCCTGTTCAGTCCACTCACAACAGCAATGGCGGCTGCTGCACGGTTTCTACTCAGAGGTGCAGGCTCGAAAGCCTCCATCGCGAATGTAAATATTGGTGATCAGAGCTTGTTTGGGATTACTCTGCTGAGGTTATCCCCGAATTGCTCATCccaaacaaaaacacaaagaaGGAATGCTGCGCACTTCACCTACcaccctgaccctgtccccacaGAGTATGGCCCCACTACAAAGATGAACTTATTTCAGTCTGTGACCAGTGCCTTGGACAACACTCTCGCCAGCGATCCCACAGCAGTCATCTTTGGGGAAGATGTCGCCTTTGGTGGAGTATTTCGTTGCACCGTGGGTCTCCGAGACAAATATGgtaAAGACCGTGTGTTCAACACTCCTCTGTGTGAGCAAGGCATTGTAGGATTTGGAATCGGTGCGGCGGTTGCCGGCGCCACGGCCATCGCTGAGATCCAGTTTGCCGACTACATTTACCCTGCCTTCGACCAGatTGTAAACGAAGCAGCCAAGTACCGCTATCGCTCCGGCAACCTATTTGACTGCGGGAACCTCACCATCCGGGCGCCGTGGGGCTGCGTGGGCCACGGCTCGCTCTACCATTCCCAGAGTCCAGAGGCCTTCTTCGCCCACTGCCCAGGCATCAAGGTTGTAATACCCAGAGGTCCGGTCCAGTGTAAGGGACTGCTGCTGTCCTGCATCGCAGATCAGAACCCCTGCATATTCTTTGAGCCCAAGATCCTCTACAGAGCAGCGGTGGAGCAGGTCCCTACAGAGGCCTACACCATCCCACTTTCGCAGGCCGAGGTTATACAGGAAGGAAGTGACGTCACTCTGGTCGCGTGGGGAACACAGATCCATGTGCTGAGGGAAGTGGCCAACATGGCTCAGGAGAAACTGGGTGTGTCCTGCGAACTCATAGATCTACAGACCATCTTGCCTTGGGACACTGAGACCGTTTGCAAGTCGGTGGCCAAGACCGGACGGCTGCTTATCAGTCACGAGGCTCCAATCACCGGAGGCTTTGCTGCCGAGATCAGCTCCACAGTGCAaGAGGAGTGCTTCCTCAACCTAGAGGCGCCCATCGCTAGAGTCTGCGGCTACGACACTCCCTTCCCCCACATCTTCGAACCCTTCTACATCCCAGACAAGTGGAAATGCTTTGATGCTGTCAAGAAGTTGATCAGCTTCTGATCTCCAACTACTAATCCCCAGAGCCACCTCTCGGAGGACCAAGACTccgagctctctctctccattgttcTCACCAATGGACATCATGCAGAAAAATACACGTTGTCGGCCATCCAATCAGGAAGCAGCATCCAGACGGAGCTCTTGGCTCTCCCTGTGCAAGCACAGACTGTTACTTCTGGTTTAGTGAACGTTTTCTGTAAATGGGGAATAGGTGTCCTCTTGGTCGACTCTCTTACTACTGTACGTTTTCTAGCTTCCATGGTAAAACAGATCCACACAGACAGTTTCACAAACACTAGTGTGAGTACCAGTAAGTGTTATTCTATAGGAACTGACTGTCAGAATAGTTGAATGTGTGTCTGCCTCAGTCTTCCCCGTTTAATTTTACTCTTTGAATGACTCTTTGCCTTTCCAATCTTAGTTTTGTTTGACATCAAGTTGACTGTACTAAAAAATAATGGACCTGTggtttttttaatgaaaataaagTAATTGACCTTCGGCCTCA

Function

GO: NA

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282589 lncRNA upstream 93686 32991994 ~ 32994017 (+) True G247682
TU282587 lncRNA upstream 94063 32978569 ~ 32993640 (+) True G247681
TU282585 lncRNA upstream 95255 32977545 ~ 32992448 (+) False G247680
TU282586 lncRNA upstream 95255 32977545 ~ 32992448 (+) True G247680
TU282484 lncRNA upstream 195266 32892193 ~ 32892437 (+) True G247580
TU282933 lncRNA downstream 33969 33206684 ~ 33206889 (+) True G247986
TU282940 lncRNA downstream 38852 33211567 ~ 33211936 (+) True G247993
TU282953 lncRNA downstream 44394 33217109 ~ 33217352 (+) True G248006
TU282954 lncRNA downstream 44748 33217463 ~ 33217694 (+) True G248007
TU282963 lncRNA downstream 56989 33229704 ~ 33230060 (+) True G248016
XM_036973897.1 mRNA upstream 19092 33057896 ~ 33068611 (+) False LOC110518846
XM_036973898.1 mRNA upstream 19092 33057899 ~ 33068611 (+) False LOC110518846
XM_036973899.1 mRNA upstream 19092 33057899 ~ 33068611 (+) True LOC110518846
XM_021596229.2 mRNA upstream 52347 33029633 ~ 33035356 (+) False LOC110518767
XM_021596277.2 mRNA downstream 168652 33341367 ~ 33344522 (+) True tpbgb
XM_036973902.1 mRNA downstream 229135 33401850 ~ 33442072 (+) False LOC110518918
XM_021596291.2 mRNA downstream 229179 33401894 ~ 33442072 (+) False LOC110518918
XM_021596298.2 mRNA downstream 229179 33401894 ~ 33442072 (+) False LOC110518918
XM_021596303.2 mRNA downstream 229179 33401894 ~ 33442072 (+) False LOC110518918
TU282359 other upstream 311916 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1228384 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1407063 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1462660 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 1961436 31125406 ~ 31126267 (+) False LOC110518266
TU283088 other downstream 251074 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 655505 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 655505 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 801761 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 833443 34006158 ~ 34013057 (+) True G248795

Expression Profile