RNA id: XM_021596277.2


Basic Information

Item Value
RNA id XM_021596277.2
length 3156
RNA type mRNA
GC content 0.45
exon number 1
gene id tpbgb
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33341367 ~ 33344522 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAACATGGTATAGCCCTCGCAGTGGTTTGTGCCGCCGCGGACTAATTTTCTCATACTCCACTTGGAGAAGAGTGTATTCAGTTGATTCGAGGGAAGCAGTGTTGGACCAAGTGTGTGCACAGATGCTTTTGTTGTATCGTGTGTTCTGGGCGTTATTGGGAAATCTCCTCGAAATCTAATGGCTGTTTACGCACTTCACTTCAAAGGTTGACTCGAATATATTTGAGGGAGAACGGTGCGATCAAACGAACTGCAAGCGGATTTGAAAGCCCCCACTAACACGAGGATCATGGTGAGAGACTTGATTGGCAACCGAAACTTTTCTCTGCGTGTAAATGTATTGCGAGGATGCTGTTTAGCTAATGAATGTAACCGCTGCCTCCCAGTTTCAATCGGAAGTAGAGCTATTTCCCGGAAAAAGGTTGAAAAGTAGCCTTTTCCACGTGGAGGACAGGAACTTGAACGTGGATTGACTcgggaaaaaaaaaacatttgtgcaCTGTAATAAGCACTGTGCTTCGTTTCATCTATCAGATTCATTGGAACCACAGGTGAAAAAATGCGTTTTGTGAGCTCATTGTTATGTTGTAAACTTGAAGAATCCCGGGAAAATACGACTCTGCTTCGTTTGTGGTTTTTCTTTGCCATCCTTGTTTCAGATTCAGCCTGTCCTGACAAATGCGTCTGTTTCACATCCACGGTAAAATGTGTGAACCAGGGCTTATTCATGGTTCCGCAACCATTGCCAGCAAACACTAAAACCCTGTTTATTACTGGGAACAACATTTCTCATCTCACAGCTGGGTCTTTCCCTGTGCCTCTTGAGCAGTTAACAGACTTGTATCTCACGGGAAACCAGGTGGAGCTGGTGGGCCACAATGTATTAAACAACTTGCCAAATCTCAGACTGCTAGACTTGAGTAACAACAGGATTCTGAATTTTAGTGCTCAAGCCTTCCCTGATTACAACAAACTGCTGGATCTGAACCTCAGCAGGGCTTTTTACAACCATTCTTTCATGGATGAGCTCTTCAGCCTGCTACGGAGTGGCGGAGCCCTTCAACTTACCCGCTTAGACCTGTCTAACAATGACCTGGTTGTCCTCCCTGAGGGCATGTTCTCCCACCTCCCCAACCTCACCATCCTCAACCTACAAAACAACTCCCTCATTTTCATCCGGAACGGGACGCTGAGTGTTCCTCCGCTCCGTGAGCTAGACTTGAGGGACAATACCCTGAGGCAACTACCCAACACTACACTGATGGACTTCAGCCTCAAGCCTGGGCTTCAGGTGCATCTGGCAGGGAACCCTTGGCTCTGTGACTGCAATATTGAGGACCTTGTGGCCTGGCTGAGGAGCTCCGAGCAGGTCACAGACAAGCAGAATATGACCTGTTCTGACCCTGAGGTTCTGCGGCAGTTACCGTTGCTCCAGATAGAGGACTTGGAGTTGGAGTGTACCTTTTCAGGTGAAATGAAAAGTGTGCTGGAGACCTCGTATGTCTTCCTGGGCATGGTGCTGGCCTTGATCGGAGTGATATTTCTGCTGGTCCTCTACCTCAACAGGAAGGGGATAAAGCGTTGGATATATAATATTCGGGACGCGTGCAGGGACCACATGGAGGGCTACCATTACAGGTATGAGATCAGCTCGGACCCCAGGTTGGCCAACCTCAGTCTCAACTCCGACATTTAAGAGGACCGCTATGTGAGCCAGGGCCCCACAGTGACTGAGGCATTATGACTTGTCAAGAGCAGGATATGCATGAGTATCTCTGTAGTTCCGGGGGGCTCCGgcctgcaacccccccccccatagtacTGTCCAGACTTCTACACCAGTCATGACTCTTAGTATCCTCAGTCATGACGACCCACAATCTGCCACCACGCATGCCCTTGGCCCCTGCAATGCAGTGTCTATTTGTTTTTTCACCTTTTCATGTAGATCAACGATCCATGGACTGAGAATCATGACTCAGATGGGGTTTGTGAGAGGGCTCTATGTAATATAACATTTTCCCTTCCTTGAGCAAAAGAGGATGGTATGTAAAACTCCCAACTAAACAGACTTATTTTGACTGGTagtaactaggctatatacataggatatatatatatccttTCTGCTGGTTatattttaaacacttttttgtttttttgtattgcTATGCTTGTTTGGTTGTATTTATTCCTTTTTAATATAATTATTAAAGCACTTGCTAATTTCTCTCACTAGTATTGCACTTGTTAGGTGGACATTATCAACATTTTTCATGATGTACAGCTGAATAAAATGTCTTGCATTGCTGTTTTCCTTTCTCGGCTGAGGTCCTTTAAACTCCAGTGACTGAGGAATGTGCAGGTATTTGGGCACCAGAGAGATTCCCGGTCACGAAATGGAGAAGTTCCCACTCCCTCGTTGCAGGTTCAAACACATGCATGCAGACAGAGGTCATCATGCCACAGCCAGCACCGACCATACCACACAGGCAAGACTTCACATGTCACCTTTATACATTAACTCGTTCTCTGTCAGCTCGTGCAGATGAGACATTTACAGGCAGCAGCCGTTGTTGACTTTCCAATTTTTACTCTGAAGAGGTGAGAAGGCTAACTGGGACTTCTGAAGGTGGCAGAATTGACCTTGAAGATGAATTGATTTGAATTACTTTCCAATTAAAGTTAAGTCAACTTCCATTCTATTTGGGAAGCGAGACGTGACTGAATGTTCCTGTCCAATTAAATCCCTACTAGGATTCGGATAGAAATCCCTGGCGCGATAGTCAAGTGATTGCATACCTCAGAACCATCCAAAATAATATTTTGAGGTGTAGCCCATGGTCAGTGGATTTCTATCCAAATCCTCTTTGGTCCAACTACACCAGTTACAGGATTGGCACCCATTCAAAGCATTCTGACGTTGTGAGCCCAAAGGGGGAAAGTTGAGGGTTGTCTTTCCTGACAAATGCTAATGAAGGTGCACAGTACCCAAGGTTGTTACCAGGAGGGCACTCTACAGGCAGTATGGTATGGAAATGAGTTCATAATCTGCTTTAATCTGCAGTGTTTTAGGTGTGTGGCGTTTTAAAGTATCTTGTTTTTCAAGCATTGTTTACTTTCCTGCTAACTAAATGCTGTGctcttcttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283019 lncRNA upstream 19925 33320363 ~ 33321442 (+) True G248069
TU283011 lncRNA upstream 42985 33298158 ~ 33298382 (+) True G248061
TU282976 lncRNA upstream 93570 33247352 ~ 33247797 (+) True G248029
TU282975 lncRNA upstream 97106 33244055 ~ 33244261 (+) True G248028
TU282963 lncRNA upstream 111307 33229704 ~ 33230060 (+) True G248016
TU283030 lncRNA downstream 3032 33347554 ~ 33347893 (+) True G248080
TU283040 lncRNA downstream 8522 33353044 ~ 33353279 (+) True G248090
TU283061 lncRNA downstream 36996 33381518 ~ 33381736 (+) True G248111
TU283062 lncRNA downstream 37331 33381853 ~ 33382146 (+) True G248112
TU283063 lncRNA downstream 37944 33382466 ~ 33382698 (+) True G248113
XM_036973900.1 mRNA upstream 168652 33086509 ~ 33172715 (+) False LOC110518871
XM_021596255.2 mRNA upstream 168652 33087703 ~ 33172715 (+) True LOC110518871
XM_036973897.1 mRNA upstream 272756 33057896 ~ 33068611 (+) False LOC110518846
XM_036973898.1 mRNA upstream 272756 33057899 ~ 33068611 (+) False LOC110518846
XM_036973899.1 mRNA upstream 272756 33057899 ~ 33068611 (+) True LOC110518846
XM_036973902.1 mRNA downstream 57328 33401850 ~ 33442072 (+) False LOC110518918
XM_021596291.2 mRNA downstream 57372 33401894 ~ 33442072 (+) False LOC110518918
XM_021596298.2 mRNA downstream 57372 33401894 ~ 33442072 (+) False LOC110518918
XM_021596303.2 mRNA downstream 57372 33401894 ~ 33442072 (+) False LOC110518918
XM_021596285.2 mRNA downstream 57372 33401894 ~ 33442397 (+) False LOC110518918
TU282359 other upstream 565580 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1482048 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1660727 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1716324 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 2215100 31125406 ~ 31126267 (+) False LOC110518266
TU283088 other downstream 79267 33423789 ~ 33424103 (+) True G248134
TU283767 other downstream 483698 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 483698 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 629954 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 661636 34006158 ~ 34013057 (+) True G248795

Expression Profile