RNA id: XM_021596285.2


Basic Information

Item Value
RNA id XM_021596285.2
length 8261
RNA type mRNA
GC content 0.57
exon number 39
gene id LOC110518918
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33401850 ~ 33442397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGAAGGAGGCGTACAAGCAATCTGCAACGCAGTCTGGGACAATTGTGAACGCGATTGTTTGGCTCTGTGAACCTGAACGTAGGGCAGGTGTGGTTTTGATGTTGGTTTGTTTTTCAAGCAAAGACATCGATACCTTGAAATATGTAGGATACACTTATTATTTAACCCGTGAGCGTTGTATGCTTACTTGACAAGTGACACGGTTTAACCGAGTCGACGTCGGGGGCCCGGCAGCAGCAACAACATCATCAATAATACGGACATAGCTATCAAGGATACATTTCCCACTGAGCCATTTGGCGCAGGCtgaatttttatttaatttttaattcGTCAAGCGGGATACATTTACTGACAGTGTGGGTTTACAAATATCCTTCTAACGGtgtgatgtgtgtatgtgagcCTGGTGTTGGCAAGTAGCTGAATAACCACCCAGGAGGATGAATGCAGAGGAAGTGGAGCTGCTCAGTGACTCCAAGTACAGGAATTATGTGGCGGCGGTGGACAAGGCCCTCAAGAACTTTGAGTACTCCAGCGAATGGGCAGACCTCATCTCTGCACTGGGCAAACTCAACAAGGTATTGCAAAGCAATGCTAAGTACCAGGTGGTGCCCAAGAAGCTGACGATAGGCAAGCGTCTGGCTCAATGCCTCCACCCAGCTCTGCCCAGCGGGGTGCACCGCAAGGCCCTGGAGACCTACGAGATCATCTTCAAGATCATTGGGCCCAAGAGGCTGGCCAAAGACCTCTTCCTCTACAGCTCTGGGCTGTTCCCTCTACTCTCCAATGCTGCTATGTCTGTGAAGCCAGTGCTGTTGGGCCTGTATGAGACCTACTACCTGCCCCTGGGAAAGACCCTCAAACCTGGCCTGCAGGGGCTCCTGACTGGGGTACTACCAGGCCTGGAGGAGGGCTCTGAATACTATGATAGGACCAACACGTTGCTGGAGAAGGTGGCTGTGGCGGTGGAGCAGTCGGCCTTCTACAGCGCCCTCTGGGGCAGCATCCTGACCAGCCCCGCCGTGCGTCTGCCCGGGGTCACCTTTGTTCTGCTACACCTCAACCGCAAACTCTCCATGGAGGACCAGCTCTACGTCATGGGCAGTGACATCGAGCTCATGGTGGAGGCAGTCAGCATATCGGTGCAGGACTCCAGTGTTCTGGTCCAGAGGAGCACCCTGGACCTGATCCTCTTCTGCTTCCCATTTCACATGAGTCAGGCCACCCGTCCAGACATGATTCGGATCCTCTCTGCAGCGCTGCACGTGGTTCTGAGGAGGGACATGTCACTCAACCGCAGACTATACGCCTGGCTGCTGGGCTTTGACAACAATGGTGTGAGGACAGGCCCTCGCAGCTCTCGACAGAGCAACCCTGAGGACCACGCTACCCACTATTTCAATACCTACTCCAAAGACATGCTGGTCCAGGCAATGGTGGGGATCCTGCAAGGGAAGGCACGAGGCGGGGAGGAGGAGAGCGTCCTGATGCATGACCTCAAGCCTTTCCGCATTCTCATCAGCCTGCTGGACAAACCTGAACTCGGACCAGCCATCCTGGAGGACGTTCTGATCGAGGTGTTCAGGACATTACACACACAGTGCCGAGCAGAGCTGGACCTGCAGAACCACCACCCGTTCAGCAAGGACCATGCTCAtctcagcagCAAACTGCGAGAGAACAAGAAAACTGCAGAGCTTATCAAAACGGCCAATCTCCTCTTCAACTCTTTTGAGCCATACTACATGTGGGACTACATCGCTCGCTGGTTGGAGGACTGCTGCAGGAAGGCAGAAAATGGACCAGGGAATGCTGGGAGCACGGATTCCTCAGGGCTCTCATTGGTGGAGTTCTGTCAGCTGGTGGACTTCCTACTGGACATTGTGTCCTTGCCTACTAGAAGCATGAGGGTAATCTGCCAGGAGACCTACATAGAGATCCAGACAGAGCACCTTCCCCAGCTGCTGCTGCGCATGGTGTCTgccctgacctctcacctcccGGCCCTGGGCCTTGGGGAGCTCACCCACTGCCTGCGCCTCTGCTCCAAGATCCTCAGCAAAGTGCAGCCCCCCTTGGTGTCCCCCCTGTCCCTGCCCACGGGCCCCCTCGCCTCCACAGCCTCTGCTAAGGAGGAGAAACGGcccctgCCCGCTACTCTGGAGCTCCCCACTGGCGAGGTGTTTGAGACAGGGGAGAACCCCAACAGCAGTCGCTCCTCCGAGAGTGGCTTCACAGACTTTGTCCAGTACCAGGCCTCTGAGGAACCAGCACCCACTCAGCCTTGCCTCAAGACGGGCTGCAGCAGctccctcccagcctcccagAACAAGCCGCAGGACAAGCCTGTCATGCAGTGCTGCCTGGAGTACTTCCAGCACTTCCTCTCCCGCCTGGTCACCCTTTACATCACCCCGGGGATGGTAGAGGGAGCTGGGGGCGAGAGGAGCGATGTGGTGCGAGCGGAACCAGAGGGCGGTGCCCAGCACAACGGGCGTGACGTGGTTGAGGTCCCGGGGCAAAGGGAGTGTCTGGCGGCTTTTACTGCTGCCTGCCAGCTCTTCCTGGAGTGCTCCAGCTTCCCCGTCTACATCGCCGAGGGCAACCTCAAGTCAACGTCTCCGCCTAAGGAGCAGACTGTATCGTTTCTATTCTCTCCTGCAGACAGCGAGCAGATGTGTCCTGCCATGTGGCTGCAGACTCTGATGGACGCCTGCTGCCTGGCCAGTGACTTCAGCGTCCAGGCCGTGGCCATCTCCCTGGTCATGGACCTAGTGGGCCTCACCCAGTCTGTCGCCATGGTCACCGCCGAGGGCAGCATTGCCGGCGGCAACCCCGACTCCACCCAGCCCATGAGCCCTAGCCAGGGCCGCGTTGCTGTGGTGATCAGGCCACCACTCACGCAGGGAATCCTGAAGTACATCGCAGAGAAGACGGACTTCTTCAAGAGTGTGGCCCTTATCCTGTGGGGACAGTTGGGGGAGGGGGCCCCTCAGCACCACCAGCGCAGCGTGGAGCTCTTCTACCAGCTCCACAACCTGGTGCCCTCCTCCAGCACCTGTGAGGACGTCATCAGCCAGCAGCTCATGCACAGAGACAAGAAAATCCGTCTCGAGGCCCATGTGAAGTTCTCTGTGCTTTGGCATCTGACCAGAGACTTGAACATCACCAAGTCTTCCCCTTTCAACCGTACCTTTGACAGgtcTCTGTTCATCATGCTGGACAGTCTAAGTTACTGGGATGCGTCGGCCAGCGCAGTGGGCCGGGCCTGGCTCAACCAGGTGCTCCAGAGACACGACATCGCCCGGGTCCTGGAGcccctcctgctgctgctgctgcacccCAAGACCCACCGTGTGTCCATCCAGCGCGTCCAGGCCCAGCGCCACTGGGCCCAGGAGGTCCCTAACCACAACGCCCAGGCCGAACAGGACATCTCAGAACCCATCTACATGAGGGACTCGGGAGTCTGTGACAacTTCGGCCAGATGCCAGGGGACTCTCTGAAGTCAGGGCTCCGAGGGCTGCCATTGGGCGACATGGAGCCCTTCTGCCTGACAGTCAACCCTCTGAGTGACAGCCTGTCCCTGCTCAGCCTGAGCAGTGAGAACCTGGTGCTGAGGGGTGACTGCCATCCTCCTGACCAGCAGGGGGAACCCCACCACCATGGCTCTGAGTCCAGCAGCTCGCACTCCTCCTCCATAGACAATGGCAGCTTCGAGGAGCCAGACAGCACCTGCAGCACAGTGAACGGATGTGGTTCCGACCAAGTCCCTTTCCTTATAGAGTCAGACAATATGGTTCCTGATGAGGAGGGTTCACTAGAAGAGGCTGTGTTGTCAGTGTTAAATGAGTTGATAGACAGGGTGGTGGGTATGGGAGATGATGAGGAGGGGCCACCTGAAACGCCGTCCCCCTCTGAAGCGTGGGCGCAGACGGACTCCGATAGCTCCTCGTCAGATACGCCGACCGGTCTTCGGCTCGATTCAGAACCCCAAGCCCCCTCTCACCGCCTCGAGATGTTAGCGGGTGGCACCCTGGGGTTCTTCCATGTCACCCCACCGGaccagacaggggaggagggggagaggcacCACGAGGTCATCACTCGCCACAGCTCGTCCCCCTCCATCGTGACCCTACCGGATAGCTCGGGCCCGGCCACCCCTCACGAGCAGAGCCTCCGTTTGGACGTTGTGGACCAGCGGGCCCGTAAGCGCTCCCACAGCAGCACCCAGCTCAGCCTCAAGGGGAAGATCATGGAGCGTCTGCAAGACAAGTCCACCGGCGCCAAGCCCAAGGTGAAGAAGAGCAAGAGGAAGGacgaggagagacagaggaaagctGTGCAGGCCGAGAAGCTCCGGCCGCCCAGCATCTTCTTCGGAGACAGCCTGGATCTGGAGAACTGGTACAGCTGCGGAGAAGGTGAGGTGTCCGAGATCGATAGTGAAACCGGCTCGCCCAGTGGGGGCGGAGACGTGAGCGGGGACATTGGTCCCAACGGGAGAGTGGGGCGTAGAGCTTCCGCCTCGCCGCCTCGGTTCAACATCCACCCCCTCTACCAGCACGTGCTACTCTACCTACAGCTGTACGACTCGTCTCGCACGCTGCACGCCCTTTCGGCCATTGCCAGCATGCTGCGGGCGGTGCCATCGGACTTCGTGGACGCCATCTCCACCACCAGCATCAACAACACCTACACACCCCAGCTGTCACTGCTGCAAAACCTGCTGGCACGCCACCGCGTCTCCGTCATGGgTAAGGACTTCTACTGCCCCATCTCCCAGGAAAGCCACTCCCACTCGTTCCGCAGCGCCATGTTCCTAGAGATCATcatctccctctgcctctacttCCTGCGCTCCTACTACTCTGCCCACGTGGGCACGGCTGCCACCGACCTGGCGGGCAACCGTGCCATGCAGCTGACCAGTTTGGAGGTCCTCACCCTCCTCTTCAGCGAGCTGTCCAAGGTGACCGGCGGCTCAGCCAAAGGCTTCGCCAGCTTCATCAGCGACGTGCTGTCCAAGTGTAAGGTCCAGAAGGTGGTGCTCCACTGCCtgctctcctccatcttctcgGCCCAGAAGTGGCACGAGCAACGGGTGGCCTCCGTCAACGTGGCCTCCCAGGAGGAGGGTCTCTCAGAGGACAGTGTCATCAACCTCTCAGAAGATCAAATGGATGGCTGCAGCGCCGTTCAGTCCCAGCTGCTGAGGCTTCTCCAGAGCCTGGTGGTGCTGGAGCACAGGGTCCTAGTGCCCGCTGAGGAGGGCGGTGACGGGGGGCCCGTGGTCGTCTCGGGGGGTGGAACATTAGGTGGTGTAACGTTAGGGACGGGGAGCGGGGCAGGGTCGGGCTTCGAACTGctgggaggagaggtggagcacATGAACCCACAGCAGCCAATGACGTCGCTGCAGTACCTTCACGGGCAGCCTATCACGGCGCAGGGCATGTTCTTGTGTGCGGTGATCCGGGCGCTGCACCAGCACCACGCGTGTAAGATGCACCCGCAGTGGATCGGCCTGATCACGGCCACGCTGCCCTATATGGGCAAGGTACTGCGCAGGGTGGTGGCCTCGGTCACACTGCAGCTCTGTAGGAACCTGGATAACCTCATTCAGCAGTACCGCTATGAGACCGCCATCACAGATACCAGACCTCAGTGGATGGCCCTGTGCATCCCCCCAGATTTGATTCTAACAGTACTGGAAGGAGTGACAGCCATCATCCACTACTGTCTACTGGACCCATCCTCCCAGTATCACCAGctgCAGGCGAGTGTGGACCAGAAGCACCTGGCGGAGGCTCGCTCAGGGATCCTGTACATCCTCCACACCATCATGTCCTCCGTCACCCTGCTGTGGAGCGTCCTGTACCAGGCCGACAGCTCTGACCGGCCAGCCGCCGCCTCCGCTGCATCCACTTCCAACATCAACCTGGGATCCACCAAGaACTTGCGTCAGCAGATCCTGGAGCTGCTAGGACCCATCTCCATGAACCACGGAGCCCACTTCATGGCAGCTATCGCCTACGTGTGGAACGAGAGGAAGCAGGTCAAGACCACTGCCGCTTACAAGGTGATCCCCACTGCCAGTGAGGAGCAGCTGTTGCTGGTGGAGCTGGTACGGTCGGTCAGCGCCATGAGGACTGAGACCGTGATGCAGACGGTCAAAGAGGTCCTGAAGCAGCCGCCGGCCATCGCCAAAGAGAAGAAGCATCTGTCTCTGGAGGTGTGCATGCTGCAATTCTTCTATGCCTACGTTCAGAGGATCCCTGTGTCCGGTCTGGTGGACAGTTGGCCGTCTCTGCTGGCCCTACTGAAGGACTCGGTACAGCTGGGGCTGCCTGCTCCTGGACAGTTCCTCATACTGGGAGTTCTGAATGAGTTCATCCTCAAGAACCCGAACCTGGAGAGCAAGAAGGACCAGCGGGAGCTGCAAgatgtGACCCACAAGGTGGTGGAGGCCATCGGAACCATCGCAGGCTCCTCTCTGGAGCAGACCACCTGGCTGAGGAGGAACCTGGAGGTCAAGGCGTCGCCACAGATCGTGGTGGACGGGACCAGCCTGGAGCAAGATGTAGAGGATCTAATGCTCACAGTGATGGAGGCGTCCAGCTTCACTCCATCTGTGTACAGCGTTCACGCCCTCACACTGCTAGCGGAGGTGCTGGCCCATCTCCTAGACATGGTGTTCTACAGTGATGAGAAAGAGCGGGTGATCCCTCTACTGGTGAACATTATGCACTATGTCGTGCCCTACCTCCGCAACCACAGTGCCCACAACGCCCCCAGCTACCGGGCGTGTATCCAGCTGCTGAGCAGCCTGAGTGGGTACCAGTACACCCGGCGGGCCTGGAAGAAAGAAGCCTTCGACCTCTTCATGGACCACACCTTTTTCCAGATGGATTCCTCCTGTGTCAGCCATTGGAGAGCCATCATTGATCATCTTATGACCCACGACAAGACCACGTTTAGAGATCTTATGActcGTGTGGCGGTGGCTCAGAGCAGCTCTCTGAATCTGTTCTCTAACCGAGACGCAGAGCTGGAGCAGAGAGCCATGCTGCTCAAACGCCTGGCCTTCACCATCTACAGCAGCGAGGTGGACCAGTACCAGAAATACCTACCTGACATACAGGAGCGGCTGGTGGAGAGCCTGCGTCTGCCCCAGGTGCCCATCCTCCATGCCCAAGTGTTCCTGTTCTTCAGAGTTCTACTGCTGCGCATGTCTCCTCAACACCTCACCTCACTGTGGCCCACCATGATCACTGAACTGGTTCAGGTCTTTTTACTCATGGAGCAGGAGCTTACTGCAGATGAGGACATGTCAAGGACGTCGGGTCCATCGGTGGCTGGCCTGGAGACCACCTACTCTGGAGGGAACGGTTTCTCCACCTCCTACAACAGCCAGCGCTGGCtcaacctctacctgtctgcctgcaAACTGCTGGACCTGGCCCTGGCACTGCCCTCCGAGAGCCTGCCCCAGTTCCAGATGTACCGCTGGGCCTTTATCCCCGAGGCATCTGATGACTCGGGCCTGGAGGTGAGACGTCAGGGGACCCACCAGAGAGAGTTCAAACCCTACGTTGTCCGACTAGCCAAGCTGCTGAGGAAACGAGCCAAGAAGAACCCAGAGGAGGACTGTTCCCTGCGTACTCTGTCCTGGGAACCGGGCCACCTCACCCTGACGCTCTACGTGATCCGCAGTATGGAGCAGCTCCTCCCTTTCTTCAACCTGCTCAGCCAGGTGTTCAACAGTAAGGCCAGCAGCCGCAATGCCGCCCCCAGCCACTCTGGGCCCTCCTTCCCCAACAAGGAGGGCAAGCTGGAGAGCCAAAAAGTGTTCTGGAGTCGGGCACGGCAAAACATTGAGGAGATGGTGGAGAAAGACTTTCTAGAGGGCCTTATCAAGACGTGAACACGAGGGACAGAGGGAAATGTATTTCCCGAAgggaaataaattaataaaaagcaCTAGTGAATAAAACTCATATTGTATATAAGGGAACATATTAGGGACATAAACAATGGGTACTAAAAATAAATCAAGTTTGTACATTTTATTTCTTCTATTTATAATGACTGTATTTTACTTTTCAAAGGCTTTTAATTATTTGTATATACAGGGCAGCTGTGAAGACTGACTGACAGTTTGTGCAAGCCCTTTCTGGGACAATGTGAAGATGCTGTGCAATTCTATATTGTTGTGACTTACTGAATTAAAGACGTATCATGAGATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283070 lncRNA upstream 6688 33394474 ~ 33395206 (+) True G248120
TU283063 lncRNA upstream 19196 33382466 ~ 33382698 (+) True G248113
TU283062 lncRNA upstream 19748 33381853 ~ 33382146 (+) True G248112
TU283061 lncRNA upstream 20158 33381518 ~ 33381736 (+) True G248111
TU283040 lncRNA upstream 48615 33353044 ~ 33353279 (+) True G248090
TU283235 lncRNA downstream 64554 33506951 ~ 33559250 (+) True snap91a
TU283555 lncRNA downstream 232631 33675028 ~ 33675236 (+) True G248552
TU283571 lncRNA downstream 251253 33693650 ~ 33700133 (+) True LOC110504028
TU283623 lncRNA downstream 289869 33732266 ~ 33732501 (+) True G248619
TU283628 lncRNA downstream 293034 33735431 ~ 33735763 (+) True G248624
XM_021596277.2 mRNA upstream 57372 33341367 ~ 33344522 (+) True tpbgb
XM_036973900.1 mRNA upstream 229179 33086509 ~ 33172715 (+) False LOC110518871
XM_021596255.2 mRNA upstream 229179 33087703 ~ 33172715 (+) True LOC110518871
XM_036973898.1 mRNA upstream 333283 33057899 ~ 33068611 (+) False LOC110518846
XM_036973907.1 mRNA downstream 8044 33450441 ~ 33507305 (+) False snap91a
XM_036973908.1 mRNA downstream 8044 33450441 ~ 33507305 (+) False snap91a
XM_021596324.2 mRNA downstream 27273 33469670 ~ 33507305 (+) False snap91a
XM_036973909.1 mRNA downstream 27274 33469671 ~ 33507305 (+) False snap91a
XM_036973910.1 mRNA downstream 27274 33469671 ~ 33507305 (+) False snap91a
TU282359 other upstream 626107 32771770 ~ 32775787 (+) False LOC110518733
TU281088 other upstream 1542575 31852668 ~ 31859319 (+) True G246282
TU280718 other upstream 1721254 31669958 ~ 31680640 (+) True G245930
TU280571 other upstream 1776851 31542653 ~ 31625043 (+) False G245799
TU279568 other upstream 2275627 31125406 ~ 31126267 (+) False LOC110518266
TU283767 other downstream 385823 33828220 ~ 33835275 (+) False G248750
TU283768 other downstream 385823 33828220 ~ 33835275 (+) True G248750
TU283831 other downstream 532079 33974476 ~ 33977835 (+) True G248794
TU283840 other downstream 563761 34006158 ~ 34013057 (+) True G248795
TU284354 other downstream 860175 34302572 ~ 34302907 (+) True G249245

Expression Profile