RNA id: XM_021596349.2


Basic Information

Item Value
RNA id XM_021596349.2
length 2182
RNA type mRNA
GC content 0.54
exon number 11
gene id zgc:172323
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 33828223 ~ 33835034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCACATCAAAAGCAGCAGAGGTCCCATAGGTGAAGACTGACCACCTCCAGAGAACGCAGACAAAGGCAAACCCGAGCAGCCGCCAACATGAGTCGCAGCCCTGAGAGGATTTCGTCCTACCGACGCCACTTTGAGGACAGCGGCAGCTCATCCTCCTACCAGGTTAGGGTGTCCAGCCCATCCCCGACCCGGAGAGTTAACcgccaccagtcagccagctaCTCGCGCAGTGCCGGAGCCAGCAGTATGCAGGCCCAGACCATGGGAAGAAGGACCGTCTCCACCTCACGTAACGCCCGCATGGCTGGCGGGAATGTGGGAACATTGGCATGTGTGGGCTATGGCAACGGGGCCCCGGTGGACCTGGACGCATCTGCTGCCGAGAACAAAGTATTCCTCAGCACGCGCAGTGGTGAGCGGCAGGAGATGGTCGTATTGAACGACAGACTTGCTGTTTACATTGAGAAGGTTCGGTCCCTGGAGCAGCAGAACAAGTTGTTGGAGATGGAGATTGACGGCATCCAGAACCGGTTCGTGAAGCCGTCGGGCCTGCGCAAACTCTATGAGGATCAGCTGAGAGATCTGAAGAAGATTGCAGATCAGATGAGAATGCAGCGGGACCAAGCCTTAGCTGGCAAAGAGGCCATGGCAGGTCAACTGGAGATAACCAAAGTCAAATACGAGGAGGCAGTTGAGCTGAGGAGGCGGGCTGAGATGGAGATCGAAGCATTCCGTCCGGATGTGGACAGAGCCACCTCTCAGCGCATCGCCCTGGAGAAACAGCTTGAGCAGTTGGAGGTGGAGATTGAATTCCTTCAGAGGGTGCACAAAGCGGAAATTGAAGAGCTACTGAAAATGATATATGCTGCCCACTCCTCAGCCCAGAGCGCTTATGACCTCCCCGACATCTCAGGCGCTCTCAAACAAATCCAAGCTCAGTATGACGAAATTGCGGCAAAAAATTTACAGGAAATGGATTCCTGGTATAAAAGTAAATTTGAAGACCTGAACAACAAGACGACGAAACATGTGGATATAGTTCGAAGTGTCAGGGAAGAAGTTGCTGGCGCCAAGAAGGATATCCTAAACAAAGAGCGTGGCCTGGAAGCTTTGAAGACCAAGAATGAGGCTCTGGAGGCACAAATTCGTGAAGCACAGGAAAAGTACAAGAAAGAGCTGGAGGACCTTCAGGCAAGAATTGAGGCCCTGAAGGAGGAACTGAAATCCACCAAGTCTAAAATCGCTCTGCACCTGCGTGAATACCAGGACCTTCTGAACATGAAGATGGCTCTGGAGATTGAGATCACAACTTACAGGAAGCTGATTGAGGGTGAGGACTTGCGACTCACAACCATGGTTGGGACCATGTCCATAATGAGTAGCAGCTCAAGCTCCATGAGTGCTGGGATGAGTGTGGGCATGGCTGGAGGCATTGGACCTGGAGGCAGTGGTGGAGGAATGGGTGGAGGAATGGGTGGCGCTGGAAGCTTAGGTGGAATGGGTGCTGGAGGGATGGGAGCTGGAGGCATGGGTGCAGGAGGCAGGGGTGGAGCTGGAAGCATTGGTGGAGGAATGGGAGCTGGAGGAATTGGGGCCAAAGGCGTGGGTGCTGGAGGTGTGGGTGCTGGAGGCCTAGGAGCTGGAGGAATGGGTGGAGGTATGGATGGTGGAGGAATTGGTGCTGTAGCCAATGGTGCTAAAGGCATGGGTGCTGGAGCCATGGGTCCTGGAGGCAATGGTGGAGGCATGGGAAAAGGTGCAGGTGATTATGGGTACGGCGCCTCCATGGAGTACTCCCACGAGGAACAGGCAGTGGAGATGACGGAGAGGAGGACGGTGCTCATCAGAACAGTTAAATCGGAGGATGAAACACTGGAAAGCGACACAAAGGAGCAAACCTACATAATCTCTGGCGCTGCCGACGACTCGGACGAGGAATAGGCGTAAATGACCATGTGAcctcctctcaccccttaacCCCTCACGCCCCTGGAGCTTTGCACTGACGGCTCATGTCTGGTCTCTGACCTTTGACCAAGACATGAGACCATGAATGACCCTGCAACCTAGTCAAGCAGTACCCTTCAGCTCTTGTGATGTGCCTTTGAACCACATATTCAGAAACTCTGTGTGCCTTACACAGCTACTCAACAAGCAGCAAATAAAGCTCTCTGCATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283729 lncRNA downstream 20876 33807112 ~ 33807347 (-) True G248724
TU283716 lncRNA downstream 28211 33799808 ~ 33800012 (-) True G248712
TU283715 lncRNA downstream 28856 33799098 ~ 33799367 (-) True G248711
TU283712 lncRNA downstream 30999 33797004 ~ 33797224 (-) True G248708
TU283682 lncRNA downstream 55452 33772375 ~ 33772771 (-) True G248678
TU284069 lncRNA upstream 60260 33895294 ~ 33895561 (-) True G248994
TU284070 lncRNA upstream 61210 33896244 ~ 33896454 (-) True G248995
TU284072 lncRNA upstream 72649 33907683 ~ 33907976 (-) True G248997
TU284087 lncRNA upstream 92918 33927952 ~ 33928467 (-) True G249012
TU284105 lncRNA upstream 115535 33950569 ~ 33955080 (-) False G249026
XM_021596343.2 mRNA downstream 9973 33810645 ~ 33818250 (-) True prdm13
XM_021596338.2 mRNA downstream 314840 33507594 ~ 33513383 (-) True prss35
XM_036973905.1 mRNA downstream 426351 33382980 ~ 33401872 (-) False ube3d
XM_036973906.1 mRNA downstream 426351 33382980 ~ 33401872 (-) False ube3d
XR_005043583.1 mRNA downstream 426351 33382980 ~ 33401872 (-) True ube3d
XM_021596363.2 mRNA upstream 3928 33838962 ~ 33844810 (-) True tstd3
LOC110519190 mRNA upstream 210569 34045603 ~ 34046368 (-) True LOC110519190
XM_021596405.2 mRNA upstream 243164 34078198 ~ 34081695 (-) True pou3f2b
XM_036964818.1 mRNA upstream 253809 34088843 ~ 34248604 (-) True LOC110504035
XM_036973918.1 mRNA upstream 456476 34291510 ~ 34301358 (-) False klhl32
TU283202 other downstream 408516 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2247021 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 2882380 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 3610634 30211570 ~ 30217589 (-) False G244393
TU284611 other upstream 522241 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 1054472 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 1060924 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 2305078 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 2522449 36357483 ~ 36357971 (-) True G251681

Expression Profile