RNA id: XM_036964818.1


Basic Information

Item Value
RNA id XM_036964818.1
length 2869
RNA type mRNA
GC content 0.56
exon number 20
gene id LOC110504035
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34088843 ~ 34248604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCCGTCACTCCCAGCACATTCATGACACGGGCCTTGATGGACAGGGCGGTGATTGTGCTGCTGACTGTATGCTGCCTGCTGCAGGGGCCTCTAGCGACCACAGGGAGGCAGCCCGGCACCAAGCACCACTTCTTCTATGCTGTGGAGATGGACGGAGGCACCAGAGCTGCACGAGCCCTGGCCGAGCAGCACGGACTACAGTTCATATCACGGATAGGCAACCTGGAGGGCCACTTCACCCTGAGAGACAGCAGGGGGCGCCCTGACAGAGCTGCCCTGGTGAACACCCTGGCAGAAAGAACAGGGGTGAGGTGGGTCCAGAGACAACAGACTCACTACAGAGACAAGAGAGCTGTTATCAGAGGACTGGACCCACACCACAgtttGCAGGAGCAGCAGAGTGAGTTACCCAGCCGTCGACAGGACTCTTTGAAGACTGGAGACCAACTGAGTCCTTCCCTGACCTTCAACGACCCTCTCTGGCCCATGCAGTGGGAACTGTTCAACCATGGCCAATACAGCTCCAGTCACTTTGACCTGAACGTGATGCCAGTGTGGAGCAGGAACATCACAGGGAACGGAGTGGTGGTCAGCATCATCGATGACGGTGTGGATCATACAAACACGGATCTGAAGAGAAACTTTGAGGCCTTGGCCAGTTTTGACCTGCGCGGCTCCCACGGACTTTCCCATGACCCCATGCCACTCAGAGACGAGGAGAACGGTCATGGCACCCGGTGTGCAGGGGAAGTGGCCATGGAGGCCAACAACTCTCACTGTGGCGTGGGCATAGCTTTCAACGCCAGGATCGGTGGTATCCGTCTGCTGGACGGCACGGTGACGGACTCCATGGAGGCCACGTCTCTGACCTTCAACAACGACTTCATCGATGTGTACGTGTGCTGCTGGGGCCCGCGGGACGACGGACAGGAGATGGCCGGGCCGGGGACACtcacacagaaagcactgaggcTGGGCACGCAGAAGGGGCGAGGTGGAAAAGGAAGTATATTTGTGTGGGCGTCTGGTAATGGTGGGTTGGTGAACGACCACTGTGGAGCAGACGGCTATGTCAACAGTGTCTACAGCATTGCCATCGGTGCGGTCACTCACATGGGCAAGCCCGCCTTTTTCGGTGAGCCCTGCCCTGCTGTCATGGCTGTCACTCTAACTGGAGCCAGTTTGGAAAACACACTACCCCTAGTGACAGTGTCCAATCTAGGGGACGGTTGTGTCACCCACTTTGCGGGGACATCCAGTGCTGCACCCATCGCGGCCGGGATTCTGGCTCTTGTCCTGGAGGCCAATCCTGACTTGACATGGAGGGATGTGCAGCATCTGATCGCCATGACGGCCAAGGTCCCCAACCCCAAAGAGCCAGGATGGAGTGTCAACGGAGCAGGGTACCACGTCCACGATAGGTATGGGTTTGGGGTTCTGGATGCAGGGCTGATGGTGCAGCAGGCCTTACAGTTCCAGGCTGTCGCCCCTCACAGGAAGTGCACACAGGAAGTCACTCTTGACCCCATCAGGATCCTGCCCTCTGGAGGAGAGGTCAGTGTGAACATCCAATCAGCAGGCTGCTTGGGGACGGACACTGAGGTCAACACACTGGAGCATGTGCAGgtGAAGGTGAGTCTCAGCAGTGTGTGTCGTGGTGACCTCTCCATAGCCCTAGCGTCCCCGGCGGGCACAGTGTCTCTGCTCCTGGCCACGCGGAGCAACGATGACTCGGCCGCCGGCCTGAGGAACTGGACCCTGATGAGCGTCCAGTCCTGGGGGGAACACCCTCACGGCGCCTGGACACTCAAGGTGACAGACAACAAGGGGACAGTGGGCCGCTGTGTCAGGGTTAGCTCAGAGGAGGCAGCGGGGGCCATCCTCAGTGTCACACTTCTCCTCTACGGCACCTACAACCCACACAGGAGCCTGCACGAAGAGCCCCTGCAGAGTTTTTTGTCCATGGGGGCATACCACCATGTCCCTCGAGCGGGGTTGTATGTTCGGGACAGGTACCCACCTCAGGACCTGATCCAGAGGGCCTttgagctagagagagacaggaaggtggGCACTGATGACATCCCCGTCCCGCGCCAACGCAAGAATTCCAAACTGGTTCATCATCCGGTGCAGTCCTTCAATGTTCTGGATCTGGATGATACTGACGGAGCAGACCTCCACTCCCACCTAAAGCTCATGTGGAACACTCTCAGGGATAAAGTGAAGACCAACTGGTTTCTCTATAAGTCCATTACAGGGAATCAGTCTCCACAGTTAAGATGGGCAGACATTGCCCTGCAGAACTTCCTGGGGGCAGGACCAGTGGTGGGGGTGGAGCCTCCTGGGATGATGCATAAACGCCGTGACAGTGTGGGCGGAGTCACCAGGTCCTCACCACCTCCAAAAAGGACACGGCTATTGCATGATGTCGCCGTGGACGTCCGAGAGATGCCCCTTACGGATCTTCTCCGAACCAGCAGAGCAACGGCACGCAGGGCAGACCGTGGGCAGGGGCAGAGCAGGGGCACCGGCCAGTGAGGGCAAGGGGTAGAGTTGAAAAAGCATCTCTCAGCCCTGGTCCAACAGAGACTGTAAAGAGAACTATGGGATCTGTGTGTTTACATTTGCCTAaatgtgagagcgagagaaagacattTTCTACATAGCCTTAATAAAGAGGATGAGGTTTGTGAATAAAATACATTCTCACAAAAACGTTTTTgtttagaaaataaataattctgcACAATTCTCAATAACCACCTTCTGTTTTGACTCGTGCTGCCAAAGTTGTAAAGGTTTATGAAAGCTacatttgtgtttttgtttttaattcatGGAAGTGTGAATTCAGCTCAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284148 lncRNA downstream 47696 34039205 ~ 34041147 (-) True G249067
TU284105 lncRNA downstream 133763 33950569 ~ 33955080 (-) False G249026
TU284106 lncRNA downstream 133895 33950569 ~ 33954948 (-) True G249026
TU284087 lncRNA downstream 160376 33927952 ~ 33928467 (-) True G249012
TU284072 lncRNA downstream 180867 33907683 ~ 33907976 (-) True G248997
TU284282 lncRNA upstream 5067 34253671 ~ 34253894 (-) True G249188
TU284342 lncRNA upstream 40402 34289006 ~ 34289230 (-) True G249236
TU284563 lncRNA upstream 49003 34297607 ~ 34297837 (-) True G249449
TU284561 lncRNA upstream 50327 34298931 ~ 34301241 (-) False klhl32
TU284562 lncRNA upstream 52662 34301266 ~ 34301549 (-) False klhl32
XM_021596405.2 mRNA downstream 7148 34078198 ~ 34081695 (-) True pou3f2b
LOC110519190 mRNA downstream 42475 34045603 ~ 34046368 (-) True LOC110519190
XM_021596363.2 mRNA downstream 244033 33838962 ~ 33844810 (-) True tstd3
XM_021596349.2 mRNA downstream 253809 33828223 ~ 33835034 (-) False zgc:172323
XM_021596357.2 mRNA downstream 253809 33828223 ~ 33835034 (-) True zgc:172323
XM_036973918.1 mRNA upstream 42906 34291510 ~ 34301358 (-) False klhl32
XM_036973919.1 mRNA upstream 42906 34291510 ~ 34301359 (-) False klhl32
XM_036973915.1 mRNA upstream 42906 34291510 ~ 34328822 (-) False klhl32
XM_036973916.1 mRNA upstream 42906 34291510 ~ 34328823 (-) False klhl32
XM_036973924.1 mRNA upstream 114399 34363003 ~ 34384107 (-) False LOC110519284
TU283202 other downstream 669136 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2507641 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3143000 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 3871254 30211570 ~ 30217589 (-) False G244393
TU284611 other upstream 108671 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 640902 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 647354 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1891508 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 2108879 36357483 ~ 36357971 (-) True G251681

Expression Profile