RNA id: XM_021596418.2


Basic Information

Item Value
RNA id XM_021596418.2
length 4088
RNA type mRNA
GC content 0.53
exon number 20
gene id mms22l
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34257353 ~ 34288713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagcatgaataTTGTGAGTGaataccagacctgggttcaaatatgtgtatttgagtatctggTATTTAATATAATTTTTCTGTGTATTTCAATATTCAAATACACAGAATATTCAAATACACAGCCAAAAAaacaattatttttatttgagTATTTGAATGTTAAAAACAAATAGTCTGCCAAATTGTATTTGACAGTAtgttcaaatacttatttcaattTGACAGTAtgttcaaatacttatttcaaagGCTATTTTCAAATACCTGGGTTAATTGCATGAGAGTGCATTTGAGTCGGTGGATTTAAGTTGTTcaaatactttccaagtgtatttccaaatacatgAAAATATTCAACTACTATTCAACTATTCAAATATATCTCAATACTTACTTCTGTTGTGGAAAttctacacagggacactcaaagtcaatctttAATTAATCATTTTTTATCATCAGCGccctggagaggttccaaccaactcaattcACCAAGTATACATGTCGATCAGGAGCTCTACCTGGGGAAGTCCCGTTAGCTCTCTAATATACtgcagacaagttatatttgcatgatttagcttattcatcaatcataattaattaatcattaacatttgcttcattcatgtgactgaccaatactGGGTCATGCATGTGACAGACCCTACGAGGCAACACCCAACACCCCAGGAGGCTTCTTGTCTAGGCGGAAACCTTGAAACTGAGATCTTTTGTTCTCAAATCAAGGGCCTGGGCGTACTGCCAACTTGCAGATACTGTTTCCTCCCTCCTGGCATTTGTTACACCTCCACCTGGACATCCACTGGTCAGTATTGGAGATTCTCCACCTGCTGGGGCAGAGGATGCAAGGTCAGGTGGTGTACGCTCACCAGTTTGTGAACCTGACAGGGGAGAACCTGACCAACAACAGCCTGTTTGAGGAGCATCTCTGCAACCTGCTCTCTGACCTCACGGGCATGGCCATGAGCAAATACAGCAAGGTAAGGCCTACTGAGGCCCTGACCAGCTATCACTACTACTGCACCTGCACCAAAGAGCTGTGGATACTACTTATACACTTACTGGAACACAGGAGCAAAGTGTTACACACACAGTCTTTCTGGAACTACATGAACACACTGCTGCAGTCTCTGATCAGTGGCCAGCCTGTAGCAGAGCAGTACGGTGTGCTCCCTACACACTGTAAAGACCCTCTGGGCTTCACCTGGTGGCTTGTCACTCACTTGGCTGAGCTGGGACAATACAGCCACAACGGGGCCTTCCAAAACGGGAAACAGCTGGAGGACAACTGGAGTTTTGTGTGTGAGCTGCTCAAGTCCACCTGTAACCCCAAGagaGCGCTACAGGAGGACCAGATCAGAATGCACGTCCACTGCTGCCTGAGTCTGTCTCTGCTATGGAAACCTAACAATGGCACTGTCGCCACACTCTGGGAGTACTACAGCAAAAACCTGAGCGGTTTGTTCACAGTGCCCTGGTTAGGGGTGTCGGGGCTCGGCAGCGTGAGCAGAACCCCCCTGGCCCTGTTGGACCAGGCCCGAAGCTgctgctccccctccccccttcgtTCCTCCGGCCACACCCAGCTGTACCGCTCAGCCAACTCCTTTCAGATCTTCCTCAGAGTGCTGGCTCTCTACCTGGCCCAGGAGAACGCAGGCGGCGCCCCTTGGAGGCAGATCAAGGGCAGGGTGTACTCTAAGTTCCACCAGCGGCGGATGCAGGAACTATCCGAGGCTGGGCTGATGAACTTCCTGCTGCTGTTCGTAGTGGTGGCCCGGCAGGCCGAGCTGGAGGACGTGGCCGGCCGGGCCTGTGAGTTGCTGGGCCTGCTCCCTCCGGACTCCCCCCCTGCCCAGCGGAGCCTGGTGTGGAGGGGCCAACTGTCTCTCTTACTGCTCTTCCAGGAGAGGGGCCTTGACGTGGGGGCCcaagctagctggctggctgcctcCTTCTCTCAGACAGCCAGGGAGTTCTACCTGAAGACCACAGAACCGTCTCGCCGCCTGGCCCTCTGGGGCCCCCTGGGGTCCTACCTAGAGGGCGTGGCCGAGGTTTTTGAGACGAGCGCAAGTCTCGGTCTGTCGGAGGAGAAGCTACTCAACGAGGGGTTCGGTctgctgctgcctgcctgccgccAGTCGGAGCTGAGCTCTACCCTGGGCTTTCTGCAGATCGTGCTGAGGGAGTTACGGAGGGTCCAGCAGCGCAATGTCCAGCCTGGCCACTCGGCATGTCCCCCCGGTGCCTGGCTGCCTCCTCCCAGTGCCAGCGTGGGTAAAGACCGCCACCTAGCGGTTGCAGCAGCTCTCTGGGCCCACTTTTTCCCCTTCCTCCGCAGCCTGCGCCTTTCCAACACCCCTCCTGCCCAACTGGCTGATGCTGCCGCAGGATTTACACTGCTGGCCTTTGACCTTCCTAGCTCTGCCCCCCAAGACCTCCAGCCCAACCCCATCCAGTCCATCATGCAGTGCTTCAGCTGGGACGACATGCTTCACCCCCTGCTAGTGACTCGCTACTTACCCCACCTGCTCCAGAACAGTGAGCTGGTGTATTCAGTGAGCTCCGGCTGTGGAGGTTCCGTGTCGGGCTCAGCCCAGACCCTGTCTGTGAGAGCCTGGTTCCGCTGTGTTCTGCAGCAGCACATCCACAAGAACCCAGATGGCACGGACAGCAGAGCAGGCAGGGCTCTGGAGGAGCAGTTGTCGGAGCTCACTAGGCTCGTATTAAGGCTCCCTGAGGTGGAGTCCATACTGCAGAGGGCCGGGCTGCAGCCTGGAGCCGGCAGCAAGCTAGTGCCCAGGTCTGCTCTGGAGATGTTTATCAAGGCTGTGGGGCGTGTGTACAGTGGGCTGCAGGTGTTGTCTGAGCGTTCTGCCATGGTCACCCGTGCTCTGGACTACACAGGGGACATCATGAAGTATATCAAACACTACCTGGTCAATAAGAGTCCTCAGGAGGGGCTGCTGCTGGCCTACTGGGCTGTGGggtACGTTGTGAAGCACTGGAGTCCCCTGCTGGCCACCTCCAAGGCCCAGCATCTGCTCTTCAACATTGTCAACGGGCtgctcctccctaactctctgtcCGGGCTGGACAAGGCCTTGAGGGACAGCCTGCCCCTCTACCTGCAGgGTCTGTCTATAGCAACCAGTATGTCTCAGTCTCAGGGTGCCTACCTGAAGAAGCAGCTCCGGGATGTCATCTCCAAGTACCTCGACCATTTCCTGCCTGCCACGCCATCGGTTGGAGCCATAGCCAATCACCCGGTGCTGCTGGCGGCCTGTGAGGCCACGCCCACCCCGCGTGGGGCGGCACTGAGAAGGAGCATCCTGCAGGTGATCAGtGAGAACTTCTTGCATTTCAAAGGCAACGCCCCTCCTCCCCGCCTGGTCACGATCCTGGCCTTCCTATTGGAGTTGCTGAGACGGAACAATGACAGTGACCCCGCCCTGCTCACCacgcccctcccctctctgctccGCTGCCTGAAGCTGGTCAACGAGCCTCACGTGAGGAGGACCAGTACAGAGGCCCTGCAGCTGGTGGTGGAGAGATGTTCGGCCGCCGCAGGGGGTGCACCATGTGACCAGACCGTCACTGTCCTACGgTCCTTTGTGGAGGAGAACGAGGGGTTGTATGACAGACAGGTGTACAGTGTTCTGGAGACGATAGCTGTTCTGGACAGTCATGTGGTCCAGGTCCTGATCCCTGTTCTGTCGCTGAGTCTGAGGAACACAGAACACAAGAGAGGACTGGGCAAGAACACCACACTGAGGAATGCATACAGGAATTTGCTGACTCTGCTGGGGGACGGTGGTCAGGCGGAGATCATCAGCCTGGAGGAGGACTGACTGTTGACCCCCAGGACCAGGTCACCATGCTGTTGACCTCAACACCACTGGGCTTCATGTATAGATAGATATACATCATGTATAGAAATTGTCCTGTTGGTGATATAGATCATAATTTATGGTCAAGTTTCCGTCTTCATGTTGAAATATTTTTCAAAAAAGGTGTTACGAAATAAAGTAAATGTGATGAAATAAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283874 lncRNA upstream 187546 33986691 ~ 34072760 (+) True G248825
TU283902 lncRNA upstream 188444 34048439 ~ 34071862 (+) False G248849
TU283903 lncRNA upstream 188444 34048439 ~ 34071862 (+) True G248849
TU283894 lncRNA upstream 225035 34034883 ~ 34035271 (+) True G248841
TU283877 lncRNA upstream 255381 34001848 ~ 34004925 (+) True G248828
TU284343 lncRNA downstream 644 34289357 ~ 34289560 (+) True G249237
TU284345 lncRNA downstream 2821 34291534 ~ 34292747 (+) True G249239
TU284351 lncRNA downstream 8490 34297203 ~ 34297439 (+) True G249242
TU284355 lncRNA downstream 14877 34303590 ~ 34304009 (+) True G249246
TU284358 lncRNA downstream 18077 34306790 ~ 34307034 (+) True G249249
XM_021596403.2 mRNA upstream 219149 34019833 ~ 34041157 (+) False fbxl4
XM_021596404.2 mRNA upstream 219149 34024041 ~ 34041157 (+) True fbxl4
XM_021596393.2 mRNA upstream 308313 33926874 ~ 33951993 (+) False LOC110519140
XM_021596396.2 mRNA upstream 333849 33909781 ~ 33926457 (+) True coq3
XM_021596374.2 mRNA upstream 353212 33898946 ~ 33907094 (+) True pnisr
XM_036973921.1 mRNA downstream 58416 34347129 ~ 34351764 (+) False LOC110519256
XM_036973920.1 mRNA downstream 59346 34348059 ~ 34351764 (+) False LOC110519256
XM_021596433.2 mRNA downstream 59792 34348505 ~ 34351764 (+) True LOC110519256
XM_021596437.2 mRNA downstream 67371 34356084 ~ 34359512 (+) True LOC110519270
XM_021596458.2 mRNA downstream 112992 34401705 ~ 34413494 (+) False cnih4
TU283840 other upstream 247249 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 282471 33974476 ~ 33977835 (+) True G248794
TU283767 other upstream 425031 33828220 ~ 33835275 (+) False G248750
TU283768 other upstream 425031 33828220 ~ 33835275 (+) True G248750
TU283088 other upstream 836203 33423789 ~ 33424103 (+) True G248134
TU284354 other downstream 13859 34302572 ~ 34302907 (+) True G249245
TU284433 other downstream 131177 34419890 ~ 34420612 (+) True G249323
TU285376 other downstream 864989 35153702 ~ 35173463 (+) True rab42b
TU285526 other downstream 931119 35219832 ~ 35221372 (+) True LOC110519579
TU287065 other downstream 2222861 36511574 ~ 36525173 (+) True G251773

Expression Profile