RNA id: TU284561


Basic Information

Item Value
RNA id TU284561
length 780
lncRNA type sense_over
GC content 0.49
exon number 2
gene id klhl32
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34291510 ~ 34328823 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgccacttgctctgagaccttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgatgggtaacgaatgatgcttcgagggtgactgttgttgatgtgcgcagagggtccctggttcgcgcccgggtatgggcgaggggacggtctaaagttatactgttacatctgtctctctgttcgttTGTGTGTGCTGATCAAGCAAAATAACTTCTGTTCTCTCTAAGACAATTGGcaataaagtatttttttttgcGGAACAGATGGGGGTGgttcagcacccctacttcccgcatCTATTTAGGCTGTTTTTGTAATTCAGTTGTGCTGTAGCCTATTTATAGCTCAGGTTTGCTGTGCCTATgtctcagaggtgtgtgtgtctctctctctctctctctctctctgtctgtctctgtctgtctgtgtgtgttctcaggcCATGTTCAGTCTGTGCATGGTGGAGAGTGAGGCAGATGAGGTGACTCTTCAGGGAGTGACCAGTGTGGGACTGAAACATGCACTAGACTTCGCCTACACAGGACAGATAATGCTGGAGCCAGGGGTGATTCAGGATGTTCTGTCGGCAGGAAGTCACCTTCAGCTGCTGGAGCTGCTCAGTCTTTGCTCACACTACCTCGTCCAGGTGAGGAGTCAAgacagacatggacacacacacacacacactcacatatattaCATACTCGCACATAGTCATATACAGTAGTACAGTCAAATAAGCACATACGtatcacacacccacacctaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284563 lncRNA downstream 1094 34297607 ~ 34297837 (-) True G249449
TU284342 lncRNA downstream 9701 34289006 ~ 34289230 (-) True G249236
TU284282 lncRNA downstream 45037 34253671 ~ 34253894 (-) True G249188
TU284148 lncRNA downstream 257784 34039205 ~ 34041147 (-) True G249067
TU284105 lncRNA downstream 343851 33950569 ~ 33955080 (-) False G249026
TU284562 lncRNA upstream 25 34301266 ~ 34301549 (-) False klhl32
TU284564 lncRNA upstream 914 34302155 ~ 34302584 (-) True G249450
TU284565 lncRNA upstream 1870 34303111 ~ 34303478 (-) True G249451
TU284560 lncRNA upstream 12940 34314181 ~ 34328795 (-) True klhl32
TU284646 lncRNA upstream 87275 34388516 ~ 34388730 (-) True G249513
XM_036964818.1 mRNA downstream 50327 34088843 ~ 34248604 (-) True LOC110504035
XM_021596405.2 mRNA downstream 217236 34078198 ~ 34081695 (-) True pou3f2b
LOC110519190 mRNA downstream 252563 34045603 ~ 34046368 (-) True LOC110519190
XM_021596363.2 mRNA downstream 454121 33838962 ~ 33844810 (-) True tstd3
XM_021596357.2 mRNA downstream 463897 33828223 ~ 33835034 (-) True zgc:172323
XM_036973924.1 mRNA upstream 61762 34363003 ~ 34384107 (-) False LOC110519284
XM_036973922.1 mRNA upstream 63006 34364247 ~ 34384107 (-) True LOC110519284
XM_021596450.2 mRNA upstream 112408 34413649 ~ 34426169 (-) False LOC110519296
XM_036973925.1 mRNA upstream 112408 34413649 ~ 34426171 (-) False LOC110519296
XM_036973926.1 mRNA upstream 127342 34428583 ~ 34454290 (-) False adcy3a
TU283202 other downstream 879224 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2717729 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3353088 30944953 ~ 30945843 (-) True G245366
TU279011 other downstream 4081342 30211570 ~ 30217589 (-) False G244393
TU284611 other upstream 56034 34357275 ~ 34359451 (-) True G249485
TU285130 other upstream 588265 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 594717 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1838871 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 2056242 36357483 ~ 36357971 (-) True G251681

Expression Profile