RNA id: XM_036973920.1


Basic Information

Item Value
RNA id XM_036973920.1
length 1504
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110519256
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34347129 ~ 34351764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTggttaaacacagtttttcagcTGGCATGCAGTCGTTGGGACAAACAGTGCTTGTCCGAGATTACTTGGGAGTAGAGAGAAATGGGTACCCGGGGTTGTGAAAAGGGTACTTGGTCCTGTAACCTACTTAGTGCAGACTGAGGGGAAACTGTGTAAGACGCATGTGGGTCAAATGATGATGCAACACAATGAAAGAGAAGACCTGAATGTGTCAGAGTGGAATGTTTCTGATTGGGACTTGGGAACTACGACTGTGACAggcacacatacagagacaccGATTGTGCCAGGCCATGAGCCTGAGGGCCCAGAGCGCCGAGAGGCCAAGAGTAAGAAGGCCTCTGGACCAATTTGGATCTGTAAACAGATCACCACAACAGCAGTCGTTGCACCTGTGAGTTGGATTGCAGTCGCTTTGCTCAATGGCAATTACTTTGAATGCGCCATAACTGGTATCAATGTAACTGTTTTCACCAACCACCTTTGCGATGGGAAGAGTCCGCAGTGCCAGGATGAACTTTATAAATTCCCCTGTGGGAGAGCCACCCACGTGCCACAATCTGACAGCAATGATGTGCTGGCAACCCTCCACGCTGAGTCGCAGGTCCTGGGTTGGCTACTGATCGCCTCCATCATGGTCTTCAACCTCCTGCTGACCTGTGTTGCCCGGTGTAACTCCCCAGTCAGCTACCTGCAGCTGAAGTTCTGGAGGGTCTATGCCCAGCGGGAGAGCGACCTGCTGGAAAGCTACACGGCAGATCACGCCGAAAAGCTTGCAGAGAGGAACCTGAAGAGCTTCTTCCAGCAGATGCCTCCAGAGCCTGTCACGACCCCACCTAATCAGGCCTGGGAGAAGATCTCGTCCCTCTACAGGTTCAGCACCAGAGACCACTACTACAGCATCCTGCACAAGTACGTGGAGAAGTGCCAGGACCCTGCAGAGGCCAGGGACCACAGGATGTCATCTGTCAGGTCAGACGGTCCAGACACTGCTAATCCGTCTGTGCTCACCTTTGTGGATGAGGGCAAGATGATGCTGTGAATGGGCATGCATATGATCATAGGAACAGCGGTGACAGCATCACTATCATGACCCTATCTGTAAACATCCTCATTACTTTTAGCGTCAAAGTTATGACTCATTATAGAGGATTGTTGTCATGATTATACTCTTCGTCGTCATCATCATGATTATCGCTGTGCGTCAGGGGATTTTTCAGTAGAAAGACCAATCACATCTGATTAACCACTCTCAGGTCTTTGCTTCAATAAAAATGCTTCCCAATTTTATATTGTGCTCAGaagggatttttatttattttttaaatagttgATCGTACTTTCTTTCTCTTTTACTTTTCTGTTTAGTATTTTTATGCTCCTCAGACTTGGCCGACATACAGGTAGTGGCATTAAACAGAAAACGCATGGTCTCGTTCTACTAAATAAGGAGCTAGTTTGTGCACTGCAAAATACTTTCAATAAAAGCCTGTTACCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284362 lncRNA upstream 36504 34311123 ~ 34311555 (+) True G249253
TU284358 lncRNA upstream 41025 34306790 ~ 34307034 (+) True G249249
TU284355 lncRNA upstream 44050 34303590 ~ 34304009 (+) True G249246
TU284351 lncRNA upstream 50620 34297203 ~ 34297439 (+) True G249242
TU284345 lncRNA upstream 55312 34291534 ~ 34292747 (+) True G249239
TU284418 lncRNA downstream 36646 34388410 ~ 34388664 (+) True G249308
TU284388 lncRNA downstream 75062 34426826 ~ 34427639 (+) True G249278
TU284387 lncRNA downstream 76142 34427906 ~ 34428407 (+) True G249277
TU284389 lncRNA downstream 76889 34428653 ~ 34429956 (+) True G249279
TU284440 lncRNA downstream 79637 34431401 ~ 34435398 (+) True G249330
XM_021596411.2 mRNA upstream 59346 34257353 ~ 34288713 (+) False mms22l
XM_021596415.2 mRNA upstream 59346 34257353 ~ 34288713 (+) False mms22l
XM_021596418.2 mRNA upstream 59346 34260306 ~ 34288713 (+) True mms22l
XM_021596403.2 mRNA upstream 306902 34019833 ~ 34041157 (+) False fbxl4
XM_021596437.2 mRNA downstream 4320 34356084 ~ 34359512 (+) True LOC110519270
XM_021596458.2 mRNA downstream 49941 34401705 ~ 34413494 (+) False cnih4
XM_021596463.2 mRNA downstream 49982 34401746 ~ 34412890 (+) True cnih4
XM_021596477.2 mRNA downstream 106739 34458503 ~ 34471595 (+) False LOC110519336
XM_021596484.2 mRNA downstream 106739 34458503 ~ 34471595 (+) True LOC110519336
TU284354 other upstream 45152 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 335002 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 370224 33974476 ~ 33977835 (+) True G248794
TU283767 other upstream 512784 33828220 ~ 33835275 (+) False G248750
TU284433 other downstream 68126 34419890 ~ 34420612 (+) True G249323
TU285376 other downstream 801938 35153702 ~ 35173463 (+) True rab42b
TU285526 other downstream 868068 35219832 ~ 35221372 (+) True LOC110519579
TU287065 other downstream 2159810 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 2271846 36623610 ~ 36627542 (+) True G251845

Expression Profile