RNA id: XM_036973929.1


Basic Information

Item Value
RNA id XM_036973929.1
length 3999
RNA type mRNA
GC content 0.51
exon number 20
gene id adcy3a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34428583 ~ 34456802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCCAGTAAAAAAGGTCAATGGTCTGGGTATTGATCACACGTTCAATACAGGGTTTCAGTGGAATAATCGATACAGGTCTCATGGCGGTGTCAACGAAAGAAGCCGGTCTCGGGCAGGTTCTGCACAGCCAGTAGCGTTTCTGGGACACAAACAAATGACCAGACACAACAACCTGAACACATCTCATCAtccaaaaataataatacaagaaCGATGCCATATGGTGCATGAACAGCCCTGGATAACAGCCCTGGACTAGACTCAGttcctgctccacacacacatcGTTTGGCATTTTACTGCATCGTTAGGAGCGTTTCGCTTCACCCGCTGTAAGATTAGCTAAATTGTGTAAGCAACCTTTGGTTTGAAACAGGGTGGGCGTTGTGTGTGTCTAAAATAAACTGATGTTGTGTAGTGGGCTGCTGCTCTTGTTTGGATTGTTCAAGCCGATGGGGGAACAGCTGTCGATAAGTAGCTATAAATTGTTCCCTCTCAAAGACTGGTTCAAGTGACATGCATATTTATTTCATGGTGCTTGTTGGATCTAGGGGTAGGCCCAGGCTTCCAACCTTTTTTTTTTCGTTCTTTAAATTTTTTAAACTATAGAAGTAGATAATTTGATGTGACAATGGTCAGAGTCAATTAGTGTGCTCAGACGTTGTGGTGCTATGGCCAGGAGGCAGAAAAACACTATGCGAACTTTAGTGGcaattaatcaatcaaattaaatcaagtgTCATATTAGAGCATGCTCGACCAGTCATAATGAATAACCATAGGCTATTTACATGTAGTTATCCTATTTGGAATTGTCTGTCCCTATTTCTGACTTTGTACATGGGAAGCAAGGGGAGTGGGTGATCTAAAGAGGGGGACGGGCTTATCGGGGGTAGAAAGTGAAGATCGAGGGCGAAAAAGCAGAGCTGTTCCGTGTTTTCTGCTGAATGCGAGAGTCCATTGTAGTCTAGTACTCGTCGAGAGGGACATGTTCAGGTTATTCTTATAACAAACACCCAACATGCACTGTTTTGATTACAAGTGACATCTAATCCTTACAAGAGCGAGCACCACCTATAGGAGATCGAAAgtgtatttttttccccccatggCTGGGTAAACGGATGCAACAATATGCGGATGGTTTTTACATCATCTGGTACAAAATCTCTGTTCACAGGCGGCATCAAAGGATAGATAGACAGGAGATGCCAAACGTCGAGTCACTGGAGAATGAAAACCTACATTGAAAGATCACGTTCATCTTTGGCCATCGACACATGTTAAATGGATACAGAATGGCTGCTGGCCAACATAGTGATCTATGTGTGTGCGATCACTGTGGGCGTCATGTCCTACTACATGGCAGACCGGAAACACCGCAAGGCCTTCCTAGAAGCACGGCAGTCCCTGGAGGTCAAACTCAATCTGGAGGAACAGAGCCAGCAACAGGAGCGTCTCTTGCTGTCCATCCTGCCCAAGCATATAGCAGACGAGATGTTGCAGGACATGAAGAAGAAAGAAGCCAGTCAGACTGGACAGAAGGAGATGCAGCAGTTCAACACCATGTACATGTATCGCCACGAAAACGTCAGTATTTTGTTTGCAGACATTGTGGGATTCACTCAGCTGTCATCATCATGCAGTGCCCATGAGCTGGTCAAGCTCCTCAATGAACTGTTTGCCCGCTTTGACAAGCTGGCTGccaAATACCACCAGTTGAGAATAAAGATCCTGGGCGACTGTTACTACTGCATCTGTGGCCTGCCAGACTACAGAGAGGACCACGCTGCCTGCTCCATCATGATGGGCCTGGCCATGGTGGAGGCCATTTCGTATGTTCGTGAGAAGACCGGGACAGATGTGGACATGCGTGTGGGGGTACACACTGGCACTGTCCTGGGGGGCGTCCTGGGACAGAAGCGGTGGCAGTATGACGTCTGGTCCACTGACGTCACCGTGGCCAATAAGATGGAGGCGGGAGGAATACCAGGGCGTGTGCACATCTCCCAGGCCACCATGGAGTGTCTGCACGGGGAGTTTGATATGGAGCCGGGGAACGGGGGCGACCGCTGTGAATACCTGAAGGAGAGGGGCATCGACTCCTACCTGGTGGTGGTGCCCAAGGGCCCCCTGGGAAAGAACGGCATCAACGGGGTGAAGTTGTCTGTGATGTCGTCCAATGGGAACTCTCCATTGTTGATCAACACCACTGAGTGTAATGGGAGTGTCCACACAGCCTGCACCACACCAGACGACCCAGAGGAGCTGGACACACGGgtggtgaaccCTTCGTTCCCCAACCCTCGGCGGAGGCTAAGACTGCGGGACCTGGCCGAGAGGGTGATTGATGCCCAAGAGAACGAACAGGAGCTCAACAAACTGCTCAATGAGGCactgctggagagagagaccgtaCAAGCTCTGAAGGGGAAACGCACCAACCGTCTGTCCCTGCGCTTTGTGGACCCTGAGTTGGAGACCCGGTACTCCGTAGAAAAGGAGAAGCAGAGCGGAGCTGCCTTCAGCTGCTCCTGTGTAGTGCTCCTGTTCACTGCAGCCATGGAGGTCCTCATAGACCCTCTGATGATAGCAAACTACGTGACCCTAGCTGTGGGAGAGGTCCTGCTGCTCGTCCTAACTGTCTGCTCTCTGGCGGCCATCTTCCCTCGAGTTTTCCCTAAGAGGCTGGTGTCTTTCTCCACATGGATCGACCACACCCGCTGGGCACGGAACACATGGGCCATGGCAGCAATCTTCATCCTCACCATGGCCGACATTGTGGACATGCTGAGCTGTCCCCGTCCCTCTGGAAACGCCACAATGGCTCCTCCTTCCTCTGTTGTCCAATCCGGGGCAGAGGGCTGTCTGGACAACCCTAAGTACTACAGCTACATCGCCGTGCTGGCACTCATGGCGACCACCATGCTGGTACAGGTCAGCCACATGGTCAAGGTCACACTCATGCTCCTCATCACCATAGCGACGGGCATCGTCAACATCTACAGCTGGAGGGACATATTTGACCGCTACGATATGGCCCGCTTCCAGGACTACAGGTCTTACCTGGTTCCCTCCAAATATGCCATGACTATCATGATCTTCATCATGATGATCAGCTTCTACTACTTTTCTCGACATGTGGAGAAGCTAGCACGTACTCTGTTCTTGTGGAAGATTGAGGTCCATGAGCAGAAGGAGAAGGTGTATGAGATGAGGCGCTGGAACGAGGCGCTGGTCACTAACATGCTGCCAGAGCACGTAGCACGCCACTTCCTGGGCTCCAAGAAAAGGGATGAGGAGCTGTACAGCCAGTCATATGATGAGATTGGGGTGATGTTCGCCTCCATCCCCAACTTCTCGGACTTCTACACAGAGGAGAGCATCAACAATGGGGGGATTGAGTGCCTCAGGTTCCTCAACGAAATCATCTCCGATTTTGACAGCCTCCTGGACGAGTCTCAGTTCCGCTGCATCACCAAAATCAAAACCATTGGCAGCACCTACATGGCAGCGTCAGGAGTCACTCCCGACGTCAGCAACGGCTACGCCTGTCTGAAGAAAGAGGAGCTGACTGACAGAGAGCGCTGGCAGCATTTGGCAGATCTGGCTGACTTTGCTCTGGCCATGAAGGTCTCGCTCATGAACATCAACTACCAGTCCTTCAACAACTTTATGCTACGCATAGgttTGAATAAAGGGGGGGTTCTGGCAGGAGTGATTGGTGCCCGGAAGCCTCACTATGACATCTGGGGAAACACTGTGAATGTGGCCAGTCGCATGGAGTCCACAGGGGTCATGGGTAACATCCAGgtggtggaaGATTGCTACCACATCTTGAAGGAGTACGGATTCCGTTTTGTGAGGAGGGGACCTATCTTTGTGAAGGGGAAAGGAGAGCTGCTTACCTACTTTCTGAAGGGTAGAGAAAAACAGGGCTCCTTCATCAACGGCTCCTCGGTCACCCTGCCACACCAAGTGGTGGACAACTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284633 lncRNA downstream 742 34428776 ~ 34429038 (-) False adcy3a
TU284632 lncRNA downstream 1414 34427885 ~ 34428366 (-) True G249499
TU284630 lncRNA downstream 2135 34426946 ~ 34427645 (-) True G249497
TU284629 lncRNA downstream 14241 34413656 ~ 34415539 (-) True LOC110519296
TU284634 lncRNA downstream 16300 34411974 ~ 34413480 (-) True G249501
TU284635 lncRNA upstream 13377 34470171 ~ 34471282 (-) True G249502
TU284678 lncRNA upstream 15800 34472594 ~ 34472798 (-) True G249545
TU284679 lncRNA upstream 16452 34473246 ~ 34473547 (-) True G249546
TU284680 lncRNA upstream 18384 34475178 ~ 34475497 (-) True G249547
TU284686 lncRNA upstream 26236 34483030 ~ 34483267 (-) True G249553
XM_036973925.1 mRNA downstream 3609 34413649 ~ 34426171 (-) False LOC110519296
XM_021596450.2 mRNA downstream 3611 34413649 ~ 34426169 (-) False LOC110519296
XM_036973924.1 mRNA downstream 45673 34363003 ~ 34384107 (-) False LOC110519284
XM_036973922.1 mRNA downstream 45673 34364247 ~ 34384107 (-) True LOC110519284
XM_036973916.1 mRNA downstream 100957 34291510 ~ 34328823 (-) False klhl32
XM_021596492.2 mRNA upstream 43351 34500145 ~ 34506986 (-) True LOC110519356
XM_021596503.2 mRNA upstream 120276 34577070 ~ 34613851 (-) True tgfb2
XR_002472830.2 mRNA upstream 140106 34596900 ~ 34601665 (-) True LOC110519379
XM_021596522.2 mRNA upstream 159938 34616732 ~ 34626850 (-) False LOC110519387
XM_021596517.2 mRNA upstream 159938 34616732 ~ 34629138 (-) False LOC110519387
TU284611 other downstream 70329 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1010073 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2848578 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3483937 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4212668 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 432712 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 439164 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1683318 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1900689 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2275051 36731845 ~ 36733440 (-) True gpatch3

Expression Profile