RNA id: TU284637



Basic Information


Item Value
RNA id TU284637
length 1120
lncRNA type sense_over
GC content 0.44
exon number 2
gene id adcy3a
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34428583 ~ 34456802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTCTGTTCACAGGCGGCATCAAAGGATAGATAGACAGGAGATGCCAAACGTCGAGTCACTGGAGAATGAAAACCTACATTGAAAGATCACGTTCATCTTTGGCCATCGACACATGTTAAATGGATACAGAATGGAGCGCAACATGTAGCCTATTTCCTGTGTGCGCTGTAAAATCAGAAGTCACGCATAGTTCTCCGGTGATATTCTCAACTGAGGACAGAGGCGCAGTTTTCTCAAGATAAATATTGGTAGGGAACGACAGACATTGCTCTCAGTATCAGTCTGTCAACTGCAAAGAAAAAACGAACCTAGGCCTCTTTTGCACAACTTGCACAGGCTGTCCATATTTCCCAGTAACTTTCTTAAAAATCCCTTTTTTTCCCAACGTGGATTGCTAGTCAGGTGACATCTCAGGTCCCCCACAATTCATCAAACGGCATCCCATATTCTTCACTTCTTTTGAGTTTTCACCATGGAAACCCCATGTGAACAATGGTGATGACCTTGATACAATGAATATAAAAGAGAAGGGTGTCAATGTAAACAAAGTTTTGCATTTGAAAAGAAACAAAGCTACATTATCGCCCTCACTTGAGTTAGCCCTAGTGAGTTTTCCATGGGCTCACGTAAGGAAAATTAACATGGTCCAGGAGACCCTTCAAATCTCCTTTTGTCTTATGTCTACATTTGGAGGACATTGGATTGGTGAATCCACTGATAGAATCAACTGACACTATCTGAGACGTGTACCTAACGAATATGTGAGGAAAGCTATTCCAAAGTGCAGGGCCTGACAATCAAGACACTACGTGTGATTTAAAGGACATTTGTGACACCTCAGGGCAAAGGGTTCAGTTTACACACAGGAGAATAAAAGGGAACCCGATGAGAGAGCACAATGTAGGCCTGCGTTTGAACCTTACAACAGTACCTTGAGGAATTTTACACCTGCAGAGCTACAAACAGATTCCCACTTTTTTTTACGACGAGGTCACAGGAAGAATACGAAACTTAGTCAGCATTCACGATGCCTCGCAACCGGGCCTTCTCAGAGCCGGAGTACTCAGCAGAGTATTCGGCGGACTGCTCTGTGACCCTACCATCGGACCCGGGCCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU284670 lncRNA downstream 9654 34444219 ~ 34444546 (-) True G249537
TU284633 lncRNA downstream 25162 34428776 ~ 34429038 (-) False adcy3a
TU284632 lncRNA downstream 25834 34427885 ~ 34428366 (-) True G249499
TU284630 lncRNA downstream 26555 34426946 ~ 34427645 (-) True G249497
TU284629 lncRNA downstream 38661 34413656 ~ 34415539 (-) True LOC110519296
TU284635 lncRNA upstream 14546 34470171 ~ 34471282 (-) True G249502
TU284678 lncRNA upstream 16969 34472594 ~ 34472798 (-) True G249545
TU284679 lncRNA upstream 17621 34473246 ~ 34473547 (-) True G249546
TU284680 lncRNA upstream 19553 34475178 ~ 34475497 (-) True G249547
TU284686 lncRNA upstream 27405 34483030 ~ 34483267 (-) True G249553
XM_036973925.1 mRNA downstream 28029 34413649 ~ 34426171 (-) False LOC110519296
XM_021596450.2 mRNA downstream 28031 34413649 ~ 34426169 (-) False LOC110519296
XM_036973924.1 mRNA downstream 70093 34363003 ~ 34384107 (-) False LOC110519284
XM_036973922.1 mRNA downstream 70093 34364247 ~ 34384107 (-) True LOC110519284
XM_036973916.1 mRNA downstream 125377 34291510 ~ 34328823 (-) False klhl32
XM_021596492.2 mRNA upstream 44520 34500145 ~ 34506986 (-) True LOC110519356
XM_021596503.2 mRNA upstream 121445 34577070 ~ 34613851 (-) True tgfb2
XR_002472830.2 mRNA upstream 141275 34596900 ~ 34601665 (-) True LOC110519379
XM_021596522.2 mRNA upstream 161107 34616732 ~ 34626850 (-) False LOC110519387
XM_021596517.2 mRNA upstream 161107 34616732 ~ 34629138 (-) False LOC110519387
TU284611 other downstream 94749 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1034493 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2872998 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3508357 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4237088 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 433881 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 440333 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1684487 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1901858 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2276220 36731845 ~ 36733440 (-) True gpatch3

Expression Profile