RNA id: XM_021596477.2


Basic Information

Item Value
RNA id XM_021596477.2
length 2887
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110519336
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34458503 ~ 34471595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattgACAGCGTACGTACAGGGGCGTCTTTAATGACGTGATCGCTCAGGTTGCACGCTGCTGACGTGTTTGTAGGGAAGTAGCAAGCTGGCTACCTAGCTAGCAACTTGAGCGTTATTTTCATTAGACGTGTGCAGCCAGTGACAGCTCATCATGGGAATAATAGCCAACGAATTGAAATAATTGGCGTCAGGAGAGTAATCGGAGTAGAGTACACAGACAAGGAATTTGCCGTGAAGTGGATTGATTCCTTCAAGGGCCATGGGCAAATGGAGGATGCCAGACCTGTATAGGGCCCCCTTCCCCCTCTACACAATCAAAGTCGACCCCAAAACAGGATGGGTGATCACTGCAGGAGGGGGAGGTGCTTCCAAAACGGGCATAAAGAATGCAGTGCACTTCCTGGGTTTGGAGTTGGTAGGAGACCAGCACTGTGCCACCCTGGTGCACTCTCATGACACAGACACGCGTGCCACCATGAACCTGGCAATAGGCGGGGATGTGATCGCCGCAGGGCAGGACGGCAGATGCAGCCTCATGCGCTTCAGACAACGCCAGACCAGGGGCAAGGCCGCAGCCAAGGACGCAGGGGGTGGCAGTGAGCAGGGCGCAGCAAGGAGACGAGCTGGGAAAGGGGGTAAGGGTAGTGAGGGAGCTGCTGCTGCTAGGGGCAATGTGTCCGAGATGAAGGATAACACCACCCAGATCTCTGTTGACACGTTTGGGGAGGTGCAGTCGGACCTCAACCCCCAGGACCCCCTCCAGAAGTGTGTGAGGTTCAGTCCCGATCTCAGCCTCCTACTGACTGGCGGAACAGACGGACACATCAGAGTGTGGGAATACCCCTCCTTAAAAGAGAAGTTGGACTTCAAAGCCCATGAGGGGGAAATTGAAGACTTGGACATCAGTCCGAATAACAAGCACCTTGTGACGGTGGGCCGGGACTTTGCCTGCAGTATATGGAGTGGCAACCAGCTGGCCATGAGCCTCTGTTGGCATGAGAAGATGCCTCAGATAGCAGCAAAGTCATACCGTTATATGGCTTGCAGGTTTGGAAAAGTCGAGGACCAGAAAGACACCCTGAGGCTCTACACCGTCCAGATCCCCCACAAACGAGACAGAAAACCTCCACAATGCTACCTCTCTAAATGGGACGGCCAGAACTTCCTACCCATGCTGACGAACCCCTGCGGCACTGAGGTCATCTCCACCCTGGCTGTCAGTGACTCTGGAACCTTTCTTGGCCTTGGGACAGTGACGGGATCAGTAGCAATCTATATCGCCTTTTCActacagAAGTTGTACTATGTGCAGGAGTCCCACGGCATTGTGGTGACGGATCTGGCCTTCCTGCCCGACACTCCCAAAGGCCAGAGCCTCAAAGGGAACAACGAGGCAGCCATGTTGAGTGTGGCTGTGGACTGCCGCTGTCAGATGCACACTGTGCGCAACCGAAGATCCTTCCCTATCTGGCTGGTGCTGTTCTTCTGTGGCCTCATGGTGGTGGGAGCTGTCCTGCTCCTGCAGCACCTCTTCCCAGGATTCATTTAGACATTGACAGGGAGTTAAGGAGAAGGAAAGAATCAGACTGCCCTACAACCACTACTAGCCCTACAATCTTCAACAACAACCTCAGAGGAACCCACCCTGACACCACTCAATCCTGGAACACGCATCAATCTCCTACCTATAGCCATCGTACCACACTTAACCAAACCGTGGAACATTTTAACCACACTTGCCCAACCCTGGACTACATTTACTATAGCCATTTACTCCCTCTTAACCCAGCAAGATTCCCTGCATCAATTACTATACCCGTAACCAATATTTGTATCCCCCATCCTTCCCTGTCACCCCTTGTCCTGATTCAGGACTACCCCCCAGTGAACCATCTGTGCTCCTTCCACCCCCAATTCTTTGAGACACAAGATTTCTTTTTTTCTTGATCTGTATCAATCTTCTTTTTGCTTTTATACCATGGTGGGGAGTTAAGGGCTCAACTTCAGATCtatatcatcaaatcaaatcaaattttatttatcATCATGAATGTGCAAGGGGTTGGGCCTTTGTTATCGTAGCTATTTAAGAAATAATTTAAAATTATAAATATACTTAAATCATTGCTCTTCTGTCAGTTTCCATCTGTCCTgtgcatacataaacacacataccaGTTTCCAGTGAGGCCTGTGTTTCCTGCTTTGTCCACTAGTTGGCATCATTGACCAAATGTCTATCTAATGTTGTTCATCCCAGACTGGGAAGCAGGCCAGGCAACAGGGCATCATGACCTTCAGGAAAAACTAAATCAATTAGGTTGGTGGACTCCCCTTTAGCTCCATTTCCAATGTTGAAAGACCTGCCGTTTTTGAGTTCTGCTCTGAAGGCACCTGTATAGGATCTCTAATCGTCTCCTTTCAGGCCTATTTCGACATTAAACCAGATTGACAGATGGAAGGGTGGTCTTTTTTTCTGCTCCACACAGCTCCGTAGATGTGTTTGTGTACAACCATTCAGTCTGGGCCCAGGGCTTGCTCTGATTCGTCAGAGCTGGACCGACTGATTCATGTTAATGGTCTAGTCACTCACGTGACATTTTAACACAAGTTAGCTAAGATAGAAGAACGAGATAATGATCCTAAATAAAATATGAGGCAGGCTATGATCCAGTGTATGTGATGGTTTTCTGTGTCTTGCAgagtatacatactgtatatcagcATTGTATGGTCTTTTGTAGCATGGAATTCAAGATTCTTGCACGTTCTCGACCAAAGCACCATGGAGAGTGCTTGGTTTGTTTCAAATGGCCGACTAACACTATCATCAAGCTGTATAGttcatctgtgtttgtttcaACCAATTAAACACTTTATTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284464 lncRNA upstream 1569 34456715 ~ 34456934 (+) True G249354
TU284461 lncRNA upstream 5558 34452730 ~ 34452945 (+) True G249351
TU284460 lncRNA upstream 6381 34451907 ~ 34452122 (+) True G249350
TU284459 lncRNA upstream 6634 34451638 ~ 34451869 (+) True G249349
TU284457 lncRNA upstream 7859 34450267 ~ 34450644 (+) True G249347
TU284474 lncRNA downstream 20761 34492356 ~ 34493274 (+) True G249364
TU284475 lncRNA downstream 21698 34493293 ~ 34493539 (+) True G249365
TU284477 lncRNA downstream 24344 34495939 ~ 34496238 (+) True G249367
TU284478 lncRNA downstream 24936 34496531 ~ 34496753 (+) True G249368
TU284384 lncRNA downstream 30059 34501654 ~ 34506269 (+) True G249274
XM_021596458.2 mRNA upstream 45009 34401705 ~ 34413494 (+) False cnih4
XM_021596463.2 mRNA upstream 45613 34401746 ~ 34412890 (+) True cnih4
XM_021596437.2 mRNA upstream 98991 34356084 ~ 34359512 (+) True LOC110519270
XM_036973921.1 mRNA upstream 106739 34347129 ~ 34351764 (+) False LOC110519256
XM_036973920.1 mRNA upstream 106739 34348059 ~ 34351764 (+) False LOC110519256
LOC118964383 mRNA downstream 112756 34584351 ~ 34584491 (+) True LOC118964383
XR_005039848.1 mRNA downstream 194001 34665596 ~ 34666854 (+) True LOC118944510
LOC110504041 mRNA downstream 200291 34671886 ~ 34675975 (+) False LOC110504041
XM_021596528.2 mRNA downstream 519428 34991023 ~ 35038369 (+) False LOC110519409
XM_021596552.2 mRNA downstream 519428 34991023 ~ 35038369 (+) False LOC110519409
TU284433 other upstream 37891 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 155596 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 445446 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 480668 33974476 ~ 33977835 (+) True G248794
TU283767 other upstream 623228 33828220 ~ 33835275 (+) False G248750
TU285376 other downstream 682107 35153702 ~ 35173463 (+) True rab42b
TU285526 other downstream 748237 35219832 ~ 35221372 (+) True LOC110519579
TU287065 other downstream 2039979 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 2152015 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 3255353 37726948 ~ 37727338 (+) True G253299

Expression Profile