RNA id: XM_021596503.2


Basic Information

Item Value
RNA id XM_021596503.2
length 4300
RNA type mRNA
GC content 0.45
exon number 7
gene id tgfb2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34577070 ~ 34613851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGCGCGCAGGGACATTGCCCGCTGCATTGTCAGGATGGGCACACTAAACACTCAATACAATAAATCGTCTCGTAACCTGAAGTTGAAGGAGTCCCCCGGTCTGAAAGTGACGACCACAACATCAATTTGAAGAAGAAGGAGCACGTGGTTAAGTAAGTCTTATAAATATCCCTCTACAACCGGCCGCATGCTGTTGTGCCACTGGCAACATCAGCTCTGCGGACCGATTTTCAGAGCAAGAAGAGATGGAGGAACGCGTCAACGGTCTACCATTGTATTAAAGGGAAATACCGATTATCTTTATACTTCAACCTACTTGCCATACTTTTGATACACTTTTTCCCCGCATTTTCTCAATTTATATTGACCCAACACATGCGTTATAACAACTTTAATAGGTTATATCTCGTCGAGACGACACCTTGCGAGTACCAGGACGGGTTGATTTTTGCACTGTTGTATGTTCTTCTGTCAAGAACCGCGATGCAACTGCTCAGCGAAACCCACCTTGATCTTGAGATAGAGAAATCAAAGACGGACTTGTGCTGAGCGAGGTACTGGCCACAGTTGGAAAGCTCGCAGCGCTCTGATGCGGTAGAGGTGTGCTCTAACCCACAGGCTACACGTCTGTTCTGCACAACTGGAGATAGCGAGCTAGCTGGTTGTAGTTTGTTTTTGCTTCAAGGTTTTTATATTAAACCTTGATTGGCATTTAATGGCCACAATTCGGTCTTTTTCGTTTGGACAATTGTAACTTTACACGCGCGTTTAGTATGCGTTTATTCTGAAGTGATTGGTAATATCATACATTGCCTACTGCTGCTGTCTGCTCCCCGCTGCCCGTATAACGGATTTTACAGATTAGTTCACTTCCATGGTTGAATGGATTTCCAGGTACAATTTGAAATACTGTGCTGAAACTGGGATCACAAAACTACCACGTTTCCCAATATTTAGGCCACAAGTAGTTACGTGTGTAAGCCTATATATCCAATATTTAGGCTTTTTTTCATGTTTATATTGCCTTTCCGTTATATTTAAATATCCTTTCCAAGGCCGCTTTTATCTTTTTTTTGGTCAATATTTCAAGACGCTGCTGTAGTCTACTTTTAGAGTTCACAATGAACTACTGCGTTTTAAGTCTTCTCCTGACCATGGATTTAGCCACTGTGGCCGTCAGTTTGTCTACATGCAGTACGCTGGACATGGATCAGTTTATGAAAAAGCGCATAGAAGCCATCCGTGGACAGATACTGAGCAAGCTGAAGCTCACGAGCCCCccggagacataccccaagcccGAGGAGGTGTCGCGGGATATCATCGCCATCTATAACAGCACGAGAGACCTGTTGCAGGAGAAAGCCAACGATCGGGCGGCGACGTGTGAGCGCCAACGAAGCGAGGAGGAGTACTACGCAAAAGAGGTTCACAAAATCGACATGCAACCCCCCTACCCCTCtgagaATGTTATCTCTCCCACGCACTACAACCCGTACTACAGACGGCTCACCTTCGACGTGACCTCCATGGAGAAGAATGCCTCTAACCTGGTCAAGGCTGAGCTACGAGTCTTCCGCCTCCAGAACCCCAAGGCCCGCGTGTCTGAACAGAGGATTGAACTGTACCAGATTTTGAGTCACAAGGACCTGGCGTCCCCGACGCAGCGCTACATTGACAGCAAGGTGGTGCGCACGCGCACGGAGGGGGAGTGGCTGTCTTTTGACGTGACAGAGGCAGTCAGTGAATGGTTGCTTCATAGAGACAGAAACAGTGGATTCAAGATCAGCTTGCACTGTCCATGCTGTACGTTTGTGCCCTCAAACAACTACATCATCCCCAATAAGAGTGAGGAGCTGGAAACCCGCTTTGCAGGTATAGATGACAGCTTCCACCACAGCGGAGACCTGAAGGTGTATCGGAAGCGGCGCCACAGCGCCCAGGCTCCACACCTGCTCATGATGCTGCTGCCCTCCTACCGCCTAGAGTCCCAGCACAAGAGCCACCGCTCCAAACGAGCCCTGGATGCTGCCTTCTGCTCCAGAAATGTCCAGGATAACTGCTGCTTGCGGTCGCTCTACATCGACTTCAAGAAAGATCTGGGCTGGAGGTGGATCCATGAGCCCAAGGGCTACAATGCTAATTTCTGCGCCGGGGCCTGTCCCTATCTATGGAGCGCTGACACCCAGCATTCCAAGGTGCTAGGCCTGTACAACACCATCAACCCGGAGGCGTCAGCATCACCCTGCTGTGTGTCTCAGGATCTGGAACCTCTCACCATCCTCTACTACATCGGCAAGACCCCCAAGATAGAGCAGCTCTCCAACATGATCGTCAAGTCCTGCAAGTGCAGCTAGGAACTGTGCAtattcagtcacacacacacacacacacacacttggatacacacacattcagtcacacacacatgcacacacgcgtgtatgcacccacccacccacacatataaatacacatactgtacatatacacatacacacattcctCAACAAACACATATTGTACAttcacacagtcagtcacactATTAGTCTCCTGCACTATTGTACAGACATATTTGATCTCCTACAAGCACAAGTGGAAAAGGTGCTGAGCAGATCTAGGTACAGAAAACATGTCTCCCGAAACAtccatgcgcacacacacacacacacacacacacacatacacacatacacacatacacacacacacacacacacacacacacacacacacacacacacacacacgcagctgtGGCTTTTGTACAGGTGTGCCTGTGTTTTTGTGTTTAGAAAGGCCCTGTTAACATGCCTCACCTCACACACTTGTCACACAAAGACACAAGAGTACGGCAAACACTGGAAAAAAAGTATACGTGTCTATATGTGAAATAATACGTCTGAGAAACAAAGACGACCCCCCGGTTTCAACATTCAAAGCAAGCCATCTCCTTGATTTTGTTTGTCTCGTTTTGCATCCTTTTGAAACTATTGTAATTTTATATTTTGTTTAGATTTTTGATAATTGTATTGCCTATTTAATATCCAGTGTTTTATGGTTAGCCCCCAACACGTTTTCAACTCTCTCGAGAAGTGGTGGATGAATCCACTTCCCAATGTCAGTTTACTAATATGTTATAACATAGTAATGTTATAATTGCATCCCATATGCTGTTTATATGTGCTGTAACAGCCACTTTAGGCAGAAAGAGGCTAGgagagtgtaagagagagacagagaacaaaaGAAAATAAGCACACCTAGCATGCCTACCTTTTCAACAGAGACTCATCCTCACACAGGCATActcataaaaaaaacacacacacacccatcccaAACACTGCAGCAGGCAACATATTCAAACTCTGCTGGAATGAACAGTCCTGACATTTTGATAACAAAACAACTAAACAAGAAAAGTGTCCCAAAGTAATGTTGAACTCTGTTTACCTTGTGCATTGCATCTTGAATGCTTTAGGAAGCCCAACAGTGATTCCATCAACTACACAAGGTATGTCATCATAAACACACGTTTAAGATTTCCCTGGATATGTTGGATTGTTCTGAGTAGAACCGGATTGTCGTTGTCTATATGATGCAGTGGTATGGGAATGTGGAAGTATGTTAGTTAGGGAGGTATACTAGTGTTGTCGTGACAATTAGAGAGAAGGGATACAATAGGTGAGAATGGACAGTAGATGTGACCTGGTTCAGAGATTATCCATGTACCTTTGAGACCATTCCATTAGGTCTGAGATGACTTTAGGTCAGAGGTCAAAAGGTCATATTTACAGGTGTGCAGTAGTAGTTATGGACACCAGCATTGTATCTGCTCATTTGCATCCGAAAAGCTTTGTCTCGCCCGCCTCCCTCAAAGTGTAAAGCCATTATTCAGTCATAGGTTTTTGTCCTTTGTAGGAATAAAAATTGTTGGATACAAAGAATTGCACTGACGCTATTTtgattctgttttttatttttgtattttttaatagTCGTTACTTCCCCGTTATTAAATGAGTGTTGATGATGTGACTTAGAGCAGGAAGTGTAGGTGACACTACCCCGCCCCTAACCCCACCCCCCTTTGTGCACCCGCGCCAGAGGACTTCCTGGAAAACCAGGAAGAGGAGCGAGGCACCAATATTGTCATGATAGAGCTATTATTTTTCGTTGTTGTTGTTTATGATgattatgtttttgttgttgttgacccaCTATGATGTATTGTAACACATTATTGTTGTTGTACTCTAGtggtaaataaattatttaaattaCAAGGGAA

Function

GO: NA

KEGG:

id description
K13376 TGFB2; transforming growth factor beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284742 lncRNA downstream 1836 34574935 ~ 34575234 (-) True G249607
TU284741 lncRNA downstream 2465 34574246 ~ 34574605 (-) True G249606
TU284733 lncRNA downstream 18824 34557836 ~ 34558246 (-) True G249598
TU284706 lncRNA downstream 52765 34523685 ~ 34524305 (-) True G249573
TU284702 lncRNA downstream 61046 34515801 ~ 34516024 (-) True G249569
TU284796 lncRNA upstream 32936 34646787 ~ 34647051 (-) True G249661
TU284802 lncRNA upstream 37406 34651257 ~ 34651506 (-) True G249667
TU284815 lncRNA upstream 50726 34664577 ~ 34664777 (-) True G249680
TU284888 lncRNA upstream 93607 34707458 ~ 34707694 (-) True G249748
TU284896 lncRNA upstream 99563 34713414 ~ 34713710 (-) True G249756
XM_021596492.2 mRNA downstream 70084 34500145 ~ 34506986 (-) True LOC110519356
XM_036973927.1 mRNA downstream 120268 34429780 ~ 34456802 (-) False adcy3a
XM_036973929.1 mRNA downstream 120276 34429780 ~ 34456794 (-) False adcy3a
XM_036973926.1 mRNA downstream 122780 34428583 ~ 34454290 (-) False adcy3a
XM_036973928.1 mRNA downstream 122780 34430409 ~ 34454290 (-) False adcy3a
XM_021596522.2 mRNA upstream 2881 34616732 ~ 34626850 (-) False LOC110519387
XM_021596517.2 mRNA upstream 2881 34616732 ~ 34629138 (-) False LOC110519387
XM_036973931.1 mRNA upstream 2881 34616732 ~ 34629879 (-) True LOC110519387
XR_002470714.2 mRNA upstream 40033 34653884 ~ 34656290 (-) True LOC110505217
XM_021581441.2 mRNA upstream 201028 34814879 ~ 34831228 (-) False vegf
TU284611 other downstream 217619 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1157363 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 2995868 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3631227 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4359958 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 275655 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 282107 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1526261 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1743632 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2117994 36731845 ~ 36733440 (-) True gpatch3

Expression Profile