RNA id: XM_021596517.2


Basic Information

Item Value
RNA id XM_021596517.2
length 1941
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110519387
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34616732 ~ 34629879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaattcactgcttgactgagggaccttacagatcattttatgtgtggggtaatgaggtaatcattcaaaaatcatgttaaacactattgttgCACATAGTAGGTCCATGCAacctattatgtgacttgttaagcaaatgtttactcctgaactttaggcttgccataacaaaggattttaatacttattgactcaagacatttcagttttcGTTTATAATTGATCTGCAAAAATGTCTGaatacataattccactttgacattatggggtattgtgcatagACCATTGACCAAAAAAAATTGTAATTGAATCCATTGTAaaagcaacaaaatgtggaaaaagagaaggggtgtgaaatcatttctgaaggcattgtTTAATATATGCTAATCTAATCCTATTTATTTGTATTCTTTTGTATATTTTATCTGTAAATAGTTCAATAAACTTTTCAATTTGTACTATCAACTTATTTTTTGTTCCAGACAAATACCATCAAGACTTCCAGtggtgtcaggttacatactgacAGCTGCTGGTCCACTGTCTTGTCAGTTCACCTCCGCTTATAAGAGGATGTAGTTCGACATTGCAACCCTGAGGGATTGGTGGAGGAGGAACTCCACTTTACACGACTACAGGATATGATTCGAGATTGGTCGCAGAGTTACAAAGCAATCATAGAGACTGAAACACACAGGAGGACCTCAGAAGAGGATTCTGAGCCCCAGGAGGACCACAGTGCTGAGAGTGATGATTCTGACAGCGGGGGGTCAGAGGATGGAGGGAGCGATGGAGAGGGGTCAGAGGATGGAGGAAGTGATGACggagaagaggatggagagagtgatgggGAGCAGGTTAAGTATGGAGGGAgcgaaggagagaaagaagagggtgAAGGCAACAGAGAAGCAGATGATGTAGACACCAACCCCAATGCTGGATGGGCGGAGGCCATGGCCAAGATTCTGCAGAAGAAAACGCCAGCGAGCAAACCCAGCATCCTGCTGAAGAACAAAGAGCTGGACAagatgaaggagaaggagaagaaggagagtcTGGAGAGGAAGAAACAGACTGATAAAAAGCGAGCTTGGGAGATGATGTGTCGAGAGAAACCAGATGttgtaaaagacagagagaatgagaggaaccTGCAGAGAGTTGCTACCAGGGGGGTAGTACAGCTGTTCAACGCTGTGAGGAAGCACCAGAAAACGGTGGATGAGAAGGTGAAGGAGGCGGGCGGCTCGGAGAGGAAGAAGGCCaagctcctctcctctgtctccaaaAAAGACTTCATCAACGTGCTGCGTGGCACAGGGGGAGGCGGCGAGGTTGTcaccaagacagagagacagatgACTGGCAGGGAGGCAGAAGAGAAACCAGCCTGGAGCGTGCTGAGAGACGACTTTATGATGGGAGCCTCCATGaaggactgggacaaggagagcgACGAGGAGGGGGGCGAGCAGGAGGCACCAGAGGGTGTGGAGGACGACAACAGCGAGTCGGACTGAGCAGACTGGCCCATCTAAGTGTGTGTATGACTGAGCACGCCCAggactgtgtgtgtacacaagaCCGTGCCTTTTGAGTCCACTGTGaggaatggagctgaagggtccTGCATCGCTGAGATCAGCTCAACccagcctccctctcctcttcccccagaGGCAGCTCTACCAGGCCCAAAGACCCCTCTTTTGAATTTTCTATATGGAACAAGGAGCTGAAGAAAGACTGCGGTCCAGGTCCTGTTCTGGCCCACAATGCTTTGGGTCAGGATACCTAGTTTGTGTAATGCTGGTGCTCTCTGGCTTGTCAAGGTCCCACTGAACATTTTTCCATCTGAACTCTGCTGTGTATATAGACCCTTTCCCCCCCTAACAGTTGCATGTCCCTCAATAAAAAGCCAGTTGATAAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284742 lncRNA downstream 41498 34574935 ~ 34575234 (-) True G249607
TU284741 lncRNA downstream 42127 34574246 ~ 34574605 (-) True G249606
TU284733 lncRNA downstream 58486 34557836 ~ 34558246 (-) True G249598
TU284706 lncRNA downstream 92427 34523685 ~ 34524305 (-) True G249573
TU284702 lncRNA downstream 100708 34515801 ~ 34516024 (-) True G249569
TU284796 lncRNA upstream 17649 34646787 ~ 34647051 (-) True G249661
TU284802 lncRNA upstream 22119 34651257 ~ 34651506 (-) True G249667
TU284815 lncRNA upstream 35439 34664577 ~ 34664777 (-) True G249680
TU284888 lncRNA upstream 78320 34707458 ~ 34707694 (-) True G249748
TU284896 lncRNA upstream 84276 34713414 ~ 34713710 (-) True G249756
XM_021596503.2 mRNA downstream 2881 34577070 ~ 34613851 (-) True tgfb2
XR_002472830.2 mRNA downstream 15067 34596900 ~ 34601665 (-) True LOC110519379
XM_021596492.2 mRNA downstream 109746 34500145 ~ 34506986 (-) True LOC110519356
XM_036973927.1 mRNA downstream 159930 34429780 ~ 34456802 (-) False adcy3a
XM_036973929.1 mRNA downstream 159938 34429780 ~ 34456794 (-) False adcy3a
XR_002470714.2 mRNA upstream 24746 34653884 ~ 34656290 (-) True LOC110505217
XM_021581441.2 mRNA upstream 185741 34814879 ~ 34831228 (-) False vegf
XM_021581443.2 mRNA upstream 185741 34814879 ~ 34831228 (-) False vegf
NM_001124417.1 mRNA upstream 187285 34816423 ~ 34830602 (-) True vegf
XM_021596584.2 mRNA upstream 420328 35049466 ~ 35052257 (-) False cited4b
TU284611 other downstream 257281 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1197025 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3035530 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3670889 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4399620 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 260368 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 266820 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1510974 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1728345 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2102707 36731845 ~ 36733440 (-) True gpatch3

Expression Profile