RNA id: XR_002470714.2


Basic Information

Item Value
RNA id XR_002470714.2
length 1329
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110505217
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34653884 ~ 34656290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtttccgtgttttacaccacacggtactgttttcacgGTTCATGGGGCATAATCACAGTGCACCAGTCCTCTCTGTCCAGCCTGGAGACATTGTGCAAATTCTCTGTAGAGCCTCACAAGACATTGGTAACGATATGGAGCTTTACCACTTCAAACCTGGACAGGCACCCAGAGGCTTCATTCATGATAGTAACTAGAAGTATCCTTACACACCTAGTCGGTTCAGTGGCTTATCGAATGGACCTCTCACCACCTCTATCACAGAGGTTGAGGTTGAAGCTGAGTAATACTGCCAACAAAGTGAACAGCTTCCATTCACAGTGAAATATGTCCGTACAAAAATCTCTGTTAGCTTCTCTCACTTCGGTGAGTTCGTGCGAGTGCCCGGCCAAGCATCAGAGAACTGTCTGACCTCTTTCCATCATAGCTGTACTGTAAGCATTTCACAATCATAAATAACTGGCAATACTGCGGCAGTAGCCGGGCAAAGCAACACAAACTTGGGAATGGAACTGAACTGGCTGCTGGTCTCTGATCTCATATACCATCTCCTGCCCTTGTGCACTTGGACAAGGCACACAACCCACCACAAATGCTCTCCGCCGAGGGGCACTGCACTACGGCTCATCCTGCGCTTctcaacatgtgtgtgtgtgtatacgctcTTAAAaatctatctagaacctaaaccCTTTAAATAACACGTTTtagttccatgtaaaaccctttccacagagtgtTCTACATTgaacacaaaagggttctacctggaaccaaaaagtgttatccTATTGGGATAGGCGAAGAACCCTTTAGGAACCTTTTTTCTATGAGTATATAGCTGGGGGTGTTGGGAAAGGCAGGAGACTAATTTTCACTCCTTCCAATGGCATGGAGAAACAATAACCCTTGCCTTTACAGTAAAGTAAATTACAATTTGAAGTGATTTAAGACTTGGGGAAAAGCACTATGGAAATGCAATCCATTATTAACGAATCCATATTATAAACATGTCCATTACCACTTCAATTGAGGGGCAGCAATTTAACATATCATTAGAGCCTAAACTAATTGAGTATGAGAATATAAAATATCATGCTGGTGTAGTGCAACACAAAATATAGTTATTATGATCATAGTGTCTATTCAATTTTAACAGCCTTCAGCAGGACATACACATTTCCATTTTTTTGTATCACCTTATTATCCAACATATTTGCATGCAGTTTTGCTTCTTGTGTCTTTAAACTACAGCTGTTTCCCCATACCACCTCAACACAGTACAACGAAGTACACCCCAATTACTTCAGACTCGCTCAACAGTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284802 lncRNA downstream 2378 34651257 ~ 34651506 (-) True G249667
TU284796 lncRNA downstream 6833 34646787 ~ 34647051 (-) True G249661
TU284742 lncRNA downstream 78650 34574935 ~ 34575234 (-) True G249607
TU284741 lncRNA downstream 79279 34574246 ~ 34574605 (-) True G249606
TU284733 lncRNA downstream 95638 34557836 ~ 34558246 (-) True G249598
TU284815 lncRNA upstream 8287 34664577 ~ 34664777 (-) True G249680
TU284888 lncRNA upstream 51168 34707458 ~ 34707694 (-) True G249748
TU284896 lncRNA upstream 57124 34713414 ~ 34713710 (-) True G249756
TU284899 lncRNA upstream 58738 34715028 ~ 34715240 (-) True G249759
TU284921 lncRNA upstream 73520 34729810 ~ 34730242 (-) True G249779
XM_036973931.1 mRNA downstream 24005 34616732 ~ 34629879 (-) True LOC110519387
XM_021596517.2 mRNA downstream 24746 34616732 ~ 34629138 (-) False LOC110519387
XM_021596522.2 mRNA downstream 27034 34616732 ~ 34626850 (-) False LOC110519387
XM_021596503.2 mRNA downstream 40033 34577070 ~ 34613851 (-) True tgfb2
XR_002472830.2 mRNA downstream 52219 34596900 ~ 34601665 (-) True LOC110519379
XM_021581441.2 mRNA upstream 158589 34814879 ~ 34831228 (-) False vegf
XM_021581443.2 mRNA upstream 158589 34814879 ~ 34831228 (-) False vegf
NM_001124417.1 mRNA upstream 160133 34816423 ~ 34830602 (-) True vegf
XM_021596584.2 mRNA upstream 393176 35049466 ~ 35052257 (-) False cited4b
XM_021596590.2 mRNA upstream 393176 35049466 ~ 35052281 (-) True cited4b
TU284611 other downstream 294433 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1234177 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3072682 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3708041 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4436772 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 233216 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 239668 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1483822 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1701193 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 2075555 36731845 ~ 36733440 (-) True gpatch3

Expression Profile