RNA id: XM_021581443.2


Basic Information

Item Value
RNA id XM_021581443.2
length 2611
RNA type mRNA
GC content 0.40
exon number 6
gene id vegf
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34814879 ~ 34831228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCTACCCGAGCGAGAAACGGACGTGTATGACAAGATCTCCCTATTCTGCGCCTGGACGTCCAAACCCAAAGTCAtagtaaaatacatttaaaagagCAAGACAAAGAAAAGGGAGACCGTTTCAGTGCGTTTCAAGGAGGATTGCTAACGGATCACTTTGCATAGGCAACCGCTCACACTCACTGCTGTGATCAATGTCGTTATAACTCAGCCGCCGCTTTCACACAGTGGAGGCATTGCGTTAAGTTGCTTTCAGAAGTTGGTGAAAGTTTTCATCCTGGTGAGCAGATAATAGGACGGAGATGTTCAGTCCATTATGGGGTTTCTAATGTGGATGTAGAATAGAAATCTTGGAAGTCTCCGGATGACCGACGCGTTTTGGATGTTACCATTCTTTGGGGCTATTCTCTGAGATTCCTTAGAGGCGGTGGcaatacaaaaaaaagaaaaaggatTCCTCTCAGGTGGCACATCTGCTATGTTTGGATGGATTTGATTTTACTATAACCAAGTTATCAAGAAATTGctgcattttttttgtgtgttttttctttATTGTGTCTGATCCAAACGACAGCTGAAATTTTAGTACAACTGTACCACTCACCCTCGGAATTACAATCATGAACATTGGCAGTTTTGTACAATTATTATTTGCAGCGCTGCTTCAGCTTCATTTTTATGCAGTTAAGacagCCCACATACCCAAGGACGGGGAGAAGAGTAAAAATGATGTGGTCCCGTTCATGGACGTGTATAACAAGAGCATGTGTCGGACACGGGAGATGCTGGTGGACGTCTTCCAGGAGTATCCAGATGAGATTGAGCACACCTACATCCCCTCGTGCGTGGTGCTCATGCGCTGCGCTGGATGCTGCAACGACGAGGCGCTCGAGTGTGTCCCCACGGAAACAAAAAACGTTACCATGGAGGTAATACAGGTGAAACAGAGAGTATCGCAACATCATTTTCTGTTAAGTTTCACAGAACATCGAAAGTGTGAATGCAGACCAAAGCCAGAAGTTAAAGCAAAGAAAGAAAAATGTGACAAACcaaggagatgagatgaggagagggggacaaTGAAATGAAGGAATATTTTCTTGGCACAGCACTTTGAAACCTGAGGACGCATTCCCTGAATGGACTGAAAATTACAATGAAAGAAGAAAGAGCGAAcgatggagagagactgagatagcAACATGCTGTTGTATATTTCTAAGATATATATTCTAAAAGGACAATGACATTGTGTATTGctgctataaaaaaaaaatgagacATTATAAAGTGAACGAATGCGCCACTGTCTGGCGTGTGAATTGGACAAATGTTTAGTTCCCAGGGTGTTTGGGCCTTCGCGTGGATAGGACTGAGAGTTTTTGTAATTTTATGTAACACTTCACTGGATGTAGGTCTGCTGTGGATATGAGTATCttaaatatatctatataaaaAAACTAAGAGAAATTGTGACCATAACTTCACTGAGAGGTGCAACGGGAACAGAGGTCTGAGAGAACTGTCAGAAAGCAGAACTACTTCCTCTGTGGGGTTAAGTTTTTGTCACCGCTGTATCTACTAATACCAGATAGGACTCGATGTGAGAATAATTCTAAAGGGATATTAAACGTAGGTATGTATGGAGACGAGACAATCCTGAACTTGATTCCGTCTTCCGCTTAGGAGCAGTGGTATTCAACTCACCACTGTCAAAATCAATAATCTCTATTTGCTTTGTTTAATGTCTTCATTTGTTTTCCAAAGATATAAttgcacacacacattaaagaATAGTCTGTTTTAGAAAAAATATTGATCTCTATATACTTACCGAATATCCCTTTgtctagtacagtacatctaATTTATAATGCTAGAATATTTTCAGAATTCTGTGCATttaatttatatatttatattcagtGTTATGGTTGATATTGATTTTACTTCAATTTTAATTTTACTAGAATGTTATCACCAATCTGTTTGGCCATGGAAAACTGTAGAcatatttctttaaaaaaaagaacagATAGATAAACTTCAACATTCCTGAAAATGagatactgtatgttttgttggGCTAGAGAGGCTGGTAAGCATGTGTCTGGACTTTGTTACAAACAACCCCTGCCACAAACATCTTTGTGAAAAGATGCCCAGCCAACATTGCAGTTTTAGGCGGGACATGTGTTTTTGCACTTGAGTGCCCGAAGACACGTCGTGAGGAGGACTGAGGGCGTCTCCCTGACCTTGGTCAGCTTGGGAAAGCTCCACACTGAGAGACTGAGACTCTGGCCAGCCCACTTTAGCCAGAACAGGACTTGGCCTAGTGGGGAACCAGGAGCATTAGGAGATGATGCTCTCTGCCCTTTGATGAAAAAAGAAACATTCTATTTGTATTTCCATGTCAGAAATGCTCTTTTTGTTTGTTGTATCATGTACAGACACATTTTTAGTATATTTTCACATTAATATATTTATTGGTGCTGTAAAATTATCCGTTTTACAATAGtaacatatttttttgttttagtgTAACTATTAACTATATTTATTTAgaaaatatattgttttttattAAACAGAAAATGCAGTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284921 lncRNA downstream 84637 34729810 ~ 34730242 (-) True G249779
TU284899 lncRNA downstream 99639 34715028 ~ 34715240 (-) True G249759
TU284896 lncRNA downstream 101169 34713414 ~ 34713710 (-) True G249756
TU284888 lncRNA downstream 107185 34707458 ~ 34707694 (-) True G249748
TU284815 lncRNA downstream 150102 34664577 ~ 34664777 (-) True G249680
TU285089 lncRNA upstream 32439 34863667 ~ 34864031 (-) True G249937
TU285093 lncRNA upstream 33927 34865155 ~ 34865402 (-) True G249941
TU285110 lncRNA upstream 37155 34868383 ~ 34868702 (-) True G249958
TU285116 lncRNA upstream 45288 34876516 ~ 34876739 (-) True G249964
TU285121 lncRNA upstream 51629 34882857 ~ 34883160 (-) True G249969
XR_002470714.2 mRNA downstream 158589 34653884 ~ 34656290 (-) True LOC110505217
XM_036973931.1 mRNA downstream 185000 34616732 ~ 34629879 (-) True LOC110519387
XM_021596517.2 mRNA downstream 185741 34616732 ~ 34629138 (-) False LOC110519387
XM_021596522.2 mRNA downstream 188029 34616732 ~ 34626850 (-) False LOC110519387
XR_002472830.2 mRNA downstream 213214 34596900 ~ 34601665 (-) True LOC110519379
XM_021596584.2 mRNA upstream 218238 35049466 ~ 35052257 (-) False cited4b
XM_021596590.2 mRNA upstream 218238 35049466 ~ 35052281 (-) True cited4b
XR_005039849.1 mRNA upstream 257898 35089126 ~ 35090393 (-) True LOC118944512
XM_036963461.1 mRNA upstream 338617 35169845 ~ 35174689 (-) False taf12
XM_021581717.2 mRNA upstream 338617 35169845 ~ 35175264 (-) False taf12
TU284611 other downstream 455428 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1395172 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3233677 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3869036 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4597767 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 58278 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 64730 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1308884 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1526255 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1900617 36731845 ~ 36733440 (-) True gpatch3

Expression Profile