RNA id: NM_001124417.1


Basic Information

Item Value
RNA id NM_001124417.1
length 573
RNA type mRNA
GC content 0.46
exon number 7
gene id vegf
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 34814879 ~ 34831228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAACATTGGCAGTTTTGTACAATTATTATTTGCAGCGCTGCTTCAGCTTCATTTTTATGCAGTTAAGacagCCCACATACCCAAGGACGGGGAGAAGAGTAAAAATGATGTGGTCCCGTTCATGGACGTGTATAACAAGAGCATGTGTCGGACACGGGAGATGCTGGTGGACGTCTTCCAGGAGTATCCAGATGAGATTGAGCACACCTACATCCCCTCGTGCGTGGTGCTCATGCGCTGCGCTGGATGCTGCAACGACGAGGCGCTCGAGTGTGTCCCCACGGAAACAAAAAACGTTACCATGGAGGTAATACAGGTGAAACAGAGAGTATCGCAACATCATTTTCTGTTAAGTTTCACAGAACATCGAAAGTGTGAATGCAGACCAAAGCCAGAAGTTAAAGCAAAGAAAGAAAACCACTGTGAGCCTTGCTCAGAGAGAAGAAAGCGCTTGTTTGTGCAGGACCCTCTCACCTGTAAATGTTCCTGCAAATTCACACAATTAGACTGCAAGTCCAGACAACTTGAGTTAAACGAAAGAACTTGCAGATGTGACAAACcaaggagatga

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0048793 pronephros development biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0048844 artery morphogenesis biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0051894 positive regulation of focal adhesion assembly biological_process
GO:0030878 thyroid gland development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0043491 protein kinase B signaling biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0035477 regulation of angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005576 extracellular region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05448 VEGFA; vascular endothelial growth factor A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU284921 lncRNA downstream 86181 34729810 ~ 34730242 (-) True G249779
TU284899 lncRNA downstream 101183 34715028 ~ 34715240 (-) True G249759
TU284896 lncRNA downstream 102713 34713414 ~ 34713710 (-) True G249756
TU284888 lncRNA downstream 108729 34707458 ~ 34707694 (-) True G249748
TU284815 lncRNA downstream 151646 34664577 ~ 34664777 (-) True G249680
TU285089 lncRNA upstream 33065 34863667 ~ 34864031 (-) True G249937
TU285093 lncRNA upstream 34553 34865155 ~ 34865402 (-) True G249941
TU285110 lncRNA upstream 37781 34868383 ~ 34868702 (-) True G249958
TU285116 lncRNA upstream 45914 34876516 ~ 34876739 (-) True G249964
TU285121 lncRNA upstream 52255 34882857 ~ 34883160 (-) True G249969
XR_002470714.2 mRNA downstream 160133 34653884 ~ 34656290 (-) True LOC110505217
XM_036973931.1 mRNA downstream 186544 34616732 ~ 34629879 (-) True LOC110519387
XM_021596517.2 mRNA downstream 187285 34616732 ~ 34629138 (-) False LOC110519387
XM_021596522.2 mRNA downstream 189573 34616732 ~ 34626850 (-) False LOC110519387
XR_002472830.2 mRNA downstream 214758 34596900 ~ 34601665 (-) True LOC110519379
XM_021596584.2 mRNA upstream 218864 35049466 ~ 35052257 (-) False cited4b
XM_021596590.2 mRNA upstream 218864 35049466 ~ 35052281 (-) True cited4b
XR_005039849.1 mRNA upstream 258524 35089126 ~ 35090393 (-) True LOC118944512
XM_036963461.1 mRNA upstream 339243 35169845 ~ 35174689 (-) False taf12
XM_021581717.2 mRNA upstream 339243 35169845 ~ 35175264 (-) False taf12
TU284611 other downstream 456972 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1396716 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3235221 31562545 ~ 31581202 (-) False LOC110518371
TU280109 other downstream 3870580 30944953 ~ 30945843 (-) True G245366
TU279014 other downstream 4599311 30211570 ~ 30217112 (-) False G244393
TU285130 other upstream 58904 34889506 ~ 34889954 (-) True G249978
TU285142 other upstream 65356 34895958 ~ 34896296 (-) True G249990
TU286719 other upstream 1309510 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1526881 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1901243 36731845 ~ 36733440 (-) True gpatch3

Expression Profile