RNA id: XM_021596584.2


Basic Information

Item Value
RNA id XM_021596584.2
length 1863
RNA type mRNA
GC content 0.50
exon number 2
gene id cited4b
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35049466 ~ 35052281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagctccacctctctctccccccatgccTCCCCTGAGTTTTTTTTTAGATGTATAATCCCTGAGTTGACCCAGAAAATAGGCAGTTGTTTCAAGATCTGATGCGGCAATCTGTGCATCGGCCCTGCTTGAGCATGAAGCGCAACCCTGTGGAATACATACTGTAATCTGGAGACACTTCGCTTTGCAGTGCAAAACTCAAATAAAACGTAGCAGTAGCAAAATCCCTGAATTTTAATCCGAGTAGATACGGACAGGAGCCATGGCAGATCATCTAATGATGCCCATGAACCACAGCTCTGTGGGTGGGGGCCTCCACGGCTACAGAATGGGCATGAACGGAGGCCTGCAGGCAGGCCACCAGCAGCACGTGGTGCCTCAGCCTGGCCTCCGAGCCCTGCCCAATGGCCAGATGATGCACTACGGCGGGGGACCTCAGCAGCAGGCCACCATGGAGGTGGCCATGAGGCAGCGGCAAGGCATGGTGGGGCCCGTGAACGGACAGCTCAACGGGGCTCAGATGGGCCACCACCAAATGACGTCTGGTAACATAATGTACAACAACGGGCAGGCCCAGCAGCAACACCACCCCCAGCACCATCACATGAGCCAGCAACAGCAGGCCCAGCAGCACCCACAGCAACAACAGCAGTATATGAATGGTGGTCTCACGTCCCAGCAGCTCATGGCCAGCATGCATCTGCAAAAACTCAACACCCAGTATCACGGACATCCACTGGGGCCCATGAACAGCAACCACATGGGCAACGGGGCAGCCCAGTACCGCATTGGCCCGGCCCAGCTGGCTAACATGCAGCAGATGGCTGGGCCGGCACTAGCCTTGAACGGCATGGACGCAGACATGATTGACGAGGAGGTTTTGACGTCCCTGGTCATGGAGCTGGGCCTGGACCGCATTCAGGAGCTGCCCGAACTCTTCCTGGGCCAGAACGAGTTTGACTTCATCTCAGACTTTGTGAGCAAACAGCTGCCCAGCACCGTCAGCTGCTGAGTGAGAGAGGACCTGAGTCAATGATGCTGTGAAGGGGCCTGGAGGGGTGGAAAGTTTGGAAAGACTTGAGTAGAGTGTTGCCCACTGGAGACAATTCAGCTTTTTGTGTTGTGCCTTTCACTGTAACTGCTTGGACGCAGTGAAAGGCAGAGAAGAGTGAGCGAGAGACGCTGGTCTGGATAACTACAGTGCTATGGTGTCATTTGTGAAGTGACCAGAGGTGTGGTTCTGTGTTGGGTCGCAGCTCACCTGTATAGGGACATCGTCCTCCCGCATCTCTTCTCTCCAAGGATGAATGTAAACAAAACTGCTAAATTTGAGAAGCCACTCTGAACAATGTTAAGACACTTGCCTCCTACCTTGGACTCAATGGCAATTTAGTAGtaagatgtatttatttattactcTCTGAGAAATTAATATAGAACAAACCAGAGACTGACAGATCTTCCAGAGAGAGGATCAAGTGCTTTTTGTGTTTTGGGTAAGATCAGGGGGAAGTAAAGCCCCTCAAATTAATTTTGGATCTTCCAAGAGCTTGGATTTCTCTCCAAGGATTTCTCTCTACAAGTAGAATGTCATTTAATGGATTTGAATGGAAGTCCATCATAAGTGAATAGCTCACTTTTGGCAAGTGTTGCTTTTCACTGCGATGTTCTCGAACCTACTGCTTGTACTGTCTAAatctgtgttactacaggaaagTCTATGTAAGATGTAGAACTGCCTTAATTATGccaatgttattattattttctttacTTTATTGCTGTGTTTTTTATCTTGACCTTTGTGGTCAAGACGGGGGGTTGTAAAAGGGTTTTGAGGATCAATAAAAATGGCCTGGATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285327 lncRNA downstream 4949 35044299 ~ 35044517 (-) True G250149
TU285292 lncRNA downstream 13902 35008313 ~ 35035564 (-) True G250124
TU285234 lncRNA downstream 48793 34922965 ~ 35000673 (-) True G250072
TU285165 lncRNA downstream 136378 34912875 ~ 34913088 (-) True G250013
TU285162 lncRNA downstream 139961 34908905 ~ 34909505 (-) True G250010
TU285432 lncRNA upstream 5662 35057919 ~ 35058249 (-) True G250244
TU285435 lncRNA upstream 8833 35061090 ~ 35061309 (-) True G250247
TU285565 lncRNA upstream 157060 35209317 ~ 35214513 (-) True G250365
TU285897 lncRNA upstream 216176 35268433 ~ 35268694 (-) True G250689
TU285899 lncRNA upstream 221000 35273257 ~ 35273519 (-) True G250691
XM_021581441.2 mRNA downstream 218238 34814879 ~ 34831228 (-) False vegf
XM_021581443.2 mRNA downstream 218238 34814879 ~ 34831228 (-) False vegf
NM_001124417.1 mRNA downstream 218864 34816423 ~ 34830602 (-) True vegf
XR_002470714.2 mRNA downstream 393176 34653884 ~ 34656290 (-) True LOC110505217
XM_036973931.1 mRNA downstream 419587 34616732 ~ 34629879 (-) True LOC110519387
XR_005039849.1 mRNA upstream 36869 35089126 ~ 35090393 (-) True LOC118944512
XM_036963461.1 mRNA upstream 117588 35169845 ~ 35174689 (-) False taf12
XM_021581717.2 mRNA upstream 117588 35169845 ~ 35175264 (-) False taf12
NM_001160631.1 mRNA upstream 117589 35169846 ~ 35174860 (-) True taf12
XM_021596610.2 mRNA upstream 123226 35175483 ~ 35202943 (-) False si:dkey-34d22.1
TU285142 other downstream 153170 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 159512 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 690015 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1629759 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3468264 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 1087855 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1305226 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1679588 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 4347004 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 4592314 39644571 ~ 39645743 (-) True G255911

Expression Profile