RNA id: XM_021596617.1


Basic Information

Item Value
RNA id XM_021596617.1
length 2078
RNA type mRNA
GC content 0.52
exon number 14
gene id si:dkey-34d22.1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35175483 ~ 35202943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACTGAGTAGTGTTATCCCGGGGTTTGAGGGTTTACTCCTTGCATTTATCCGCGGAAATCATGTTCTTGAAACCTGGACAGATTAGAGATGCTGTGAATTATTTGGGCAGTTTTTGGATCGTCTTTAGTTTCGTGTTTATAATTGTCAACGGACAGGAGGGCAATGGCTGCGGGCACACTGTGATGGCCACAGAGAGTGGCACCCTGGCCTCTCAGAACTACCCGTGGACCTACCCTGTTGATTCCTGGTGTAAGTGGAGACTGCGAGTTCCGAAGGGACGTACACTGCACCTCCTCTTTGGGGACTTTGACGTGGAAAGGAGTCCGGGCTGCAGGAATGGCTCCCTCACCATCACACCCAACAACGGAGCTCCCAGCCTGGGCCCCCTGTGTGGACAGCTTGAAGACTCAGAGAAAAATGTGACTGTAAACAGCAATGAGGTGACAATAGTATTCTACTCTGGCCCCCATCACTCAGGCCGAGGGTTCCTGTTCTCCTACACCACAGACCAACACTCAGGTCTCATTTCGTGTCGACAGAGAGGAACACATTTTATATCTCAGCAGTTTAGtgtgtactgtcctgctggGTGTAAGGACGTGACGGGGGACATATGTGGTCACTCTGAGCAGGGTTACAGAGATACGTCAGTCTTGTGCAAAGCTGCGATCCATGCCGGGGTGGTGTCAGACAACCTAGGAGGACGGATCACTGTGACCCGTGGGAGGAGCCTCACGCTTTATGAGTCCAGCTTTGCCAACGGCATTCTGTCCAAGATGGGATCACTGTCTGAAAAGAAGCTGGTCTTCACCAAAGaGTGTAATGATGAACTGACTGTGTCTGGTTTCAATGCATCTTCCATCTGGAGAGAAGTGAACAGACTGGGGCAGCTTGTATTATGGTCCCCTAAGAACATGGATGCAGAGGGACAGTTACTACCCTGGGCATCGGACGGTAGTGACCGGGAGCCCTGGCTGGAGCTAGAGCTTACAGACAAGAGTAGTGTCACAGGAATAATAACAAGGGGATCGGCTGACTTCTACATCGAATCTTACGTTCTCCTTTTTAGCAAAGACCGCCACAACTGGAAAGTCTACAAATCTGCTCTCAGCAGAGAGAAAAAGGTGTTTGAAGCCCACTCTGATGGTCATCTGAGGGTTCTCAATAGCCTGTTTCCTCCGGTGGTAGTCCGGTACCTCCGGCTGCAGCCCCAGAGCTGGCAAGGTAGGGCCTCGGCACACGTCCAGGTCCTGGGCTGTCCTCTCCCCAAGATCCACCCCAGGCCTCGCTCCGCTGGGGGCTCCAATCAGCCAGTGATAGTTGCGGTGGGCGTGGTTCTCGGACTGATCCTGTGTGTCAGTTGTCTGTTGGCTGGAGTCTGGTGGAATAGAAGGAAAAAAGCTGCACACATGAAAATGTTTTCCGTACCCAAAGCAGCCTCTCAGAGTTTCCAGGAGAAGAGCCTCCCCTGCTCTGACTCTGAGCTTATCTCCTACCCTCTAGAGCGGAGTGTCCATGATGCTTTACCCAACCCTCCTCTCAATGACTATGCAGAGCCAGATGTgatggcttgggggcagaagctTGGCTCCACCTTCCGGCCCACAGTGGAGGAGGGCTACACCGTCCCCTTCACTTTCAACCACTATGATACCCCTGGAAAGCTCCTAGAGCACACTGAGCCCCTGCCCCTGGAGCCCGAGTATGCCACCCCATTCAGTGACCAGCCCCCAGATCCCAATCTGGCAACTCCACAGGGGACACTACACAACAACAAACATGTACTGCCTATGGTTTCTACAGGGACAAGGACCACAATAATCCAAGCCCAGTATGACTGCCCCTCTCACAGAAAGTTGCCCAATGGCTATTGCACTACGTCTCTCCATGCCAATGTCCCACGCCCGGCCAGTGTGGTCTACACTGAGCCTGAGCCCCTGTTGTCTGACTCCCTGCTACAGCACCCATATGAGGAGCCTTTCTGAATATAGCAAGCTCAACCACTATTCCTGAAGTGTTACATATTGCACGCTataaatgtaaaggtcatttacGATTGCGCCGATACATGCAGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285435 lncRNA downstream 114944 35061090 ~ 35061309 (-) True G250247
TU285432 lncRNA downstream 118004 35057919 ~ 35058249 (-) True G250244
TU285327 lncRNA downstream 131736 35044299 ~ 35044517 (-) True G250149
TU285292 lncRNA downstream 140689 35008313 ~ 35035564 (-) True G250124
TU285234 lncRNA downstream 175580 34922965 ~ 35000673 (-) True G250072
TU285565 lncRNA upstream 6374 35209317 ~ 35214513 (-) True G250365
TU285897 lncRNA upstream 65490 35268433 ~ 35268694 (-) True G250689
TU285899 lncRNA upstream 70314 35273257 ~ 35273519 (-) True G250691
TU285900 lncRNA upstream 70773 35273716 ~ 35274033 (-) True G250692
TU285914 lncRNA upstream 92779 35295722 ~ 35295938 (-) True G250706
XM_021581717.2 mRNA downstream 989 35169845 ~ 35175264 (-) False taf12
NM_001160631.1 mRNA downstream 1393 35169846 ~ 35174860 (-) True taf12
XM_036963461.1 mRNA downstream 1564 35169845 ~ 35174689 (-) False taf12
XR_005039849.1 mRNA downstream 85860 35089126 ~ 35090393 (-) True LOC118944512
XM_021596590.2 mRNA downstream 123972 35049466 ~ 35052281 (-) True cited4b
XM_021596651.2 mRNA upstream 899900 36102843 ~ 36109189 (-) False LOC110519653
XM_036973959.1 mRNA upstream 909244 36112187 ~ 36116920 (-) False stmn1b
XM_036973958.1 mRNA upstream 909244 36112187 ~ 36117544 (-) True stmn1b
LOC110519907 mRNA upstream 1233438 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 1283932 36486875 ~ 36505339 (-) True LOC110504056
TU285142 other downstream 279957 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 286299 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 816802 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 1756546 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 3595051 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 937169 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 1154540 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 1528902 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 4196318 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 4441628 39644571 ~ 39645743 (-) True G255911

Expression Profile