RNA id: XM_036973943.1


Basic Information

Item Value
RNA id XM_036973943.1
length 2134
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110519579
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35203647 ~ 35221874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCGAACAACCGCTTCTCGTGACAGTAGGACAGATGCTTCTCACAGGCAAATACTGCCTTCGTTGCAGGAAGTGTAGCGAAGCAGCAGTACAGCGCATGTTCTGAGAACTCTCTGCAAGCAAATGATGAATTCTCTGCAGTGAAACGCAGTCCAGGGAGTGGTCATGGCGAGTGCTGAGATCACAGTGTCCTCAAGAAACATAGTGatggtgaaggaagaggaggaggaaggggagcacTGTGAGAGCCGCAAGACTCAGGTCATCCTCCATCTGCAGCCCATCATACAGGGGGCAAATGAGGACAACGCTGACACTGGCTCTACTGTTCTAGCCATAGAGACGCATCATGAAGACAATCTTGCGGAGGGTGAGGAGGTTGAGTATGGATACCCCATCACCTGTGGCGAAAGCAAAGCAGTCCTCCTGTTTAAGAAGTTTGTCTGCCCTGGCATCAACATCAGATGTGTCAAGTTCAATGACCAGCTGATCAGCCCCAAGCAGTTTGTTCACATGGCAGGGAAAGCCACTCTGAAGGACTGGAAGAGGGCCATCCGACTGGGAGGGGTGATGCTCAGGAAAATGATGGACTCAGGTCAGATTGACTTCTACCAGCATGACACAGTGTGCACCAACACCTGCCGCAGCACTAAGTTTGACGTGTTGATCAACAGCACCCGCTTCCTTCCGGGCAGCGCCATGCAGCACCCCCCTTCCCCTCTGCCAAtAGATGGAGGCCATGCTGCAGTGTCAGATGACAGGCTAGAGGAGAAGGCCTACACTACAGTGGAGTGGAGCCCTGGGCCAGCTCCTCCCATCACCAGCACAGCCAATGGACATGTCAAGAGGAAAAGGGGTGACATCATCCCTGATGGCAGTCTAAGCTTTTGGAGAGGCATAGCAGACGTTGGCCTGATGGGGGAGGTGTTATCCAGTTTCCGCACAGAACTGGTGGCCATGTTGAGAGGAGTGGAGGTCCGCAGTGAGAAGGCCATTTTGCAAGAAGCCGATGCGGTTGTGCTGAACTCCCTTTCTGCGATGTTTGGGCTGCTGGACTCAGTGAGGAGGGTTCTGGACCTGAGACGCAGTGAGACTGATGACAACCAGCAGCAGGTCCACAATGCTCTTAATGTGCTGGAGGACCAGTTGGAGGACCAGAGGAAGCAGAGGCAGGATGAGCCCCCACCCAGCCCTGGTCACCTCTACATGGGCAGCTTCTCCAAGGCCACCCCCTCAAAGTGCCCGCGGCTGCATCCCTCTAGCTCTTCCACCACCCAGCCTCAGAACCAGACCACACAATCGTCTATCGTCTTATCTCCCATTACcacatccccagtgggtcagcCTCTCAATGTGGCCGGCTTGCCTGTGGCCACACTGGCCCAACTCCCCACTGGCTCCCAGCTCTTCACCCACTACACCACTGGCAACACCTCTGCAGGAAAGAGAGGCAGAGCCAGGTCTGTGGCTCTCCATGCAGCCTCCAGGGTGACTGTGCTCAACACAACCACAGAGTCATGGGTAGGGACCCCTCTACAGGCGCTTCATCTAACCCAGAAGAAGGAGCAGGACTCTGGGGACAAGGAGAGCCAgagactgggggaggagaggatagtaCTTGTGCAGCAGGGGGTACTACTGGACACTCCAGGGATTCAGACACACTTTGCTGGGAACAGTGGGGGCTCAATCAGagatggaggaaaagggggaggaacAGGGGAGGGACAGGAGAGTGAAGGTACAGAAGGAAGGGTTGCATAATGTAGAGTATAATGTAGAGTCTTTGGCAGGAACAGGGCATTAAAAGAATGTAAAGccaagtgagagaagagagaaccgTAAGGAATACAGTTGAAAGAgaatagagtgagtgagtgagtcagcgagcgagtgtgtgtgtgtgacagtgtgtctgtgtggaagaGAGCAAGAAGGTGAACTTCGCCATGTCATGTCATGTGTAGCGCCACACAGATTTTAGGCTATATGTGTTTTAGGCTATATGTGTTTTAGGCTACATGTGTTTTAGGCTACATGTGTTTtaggctatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285338 lncRNA upstream 143165 35060255 ~ 35060482 (+) True G250160
TU285337 lncRNA upstream 143632 35059799 ~ 35060015 (+) True G250159
TU285336 lncRNA upstream 143907 35059526 ~ 35059740 (+) True G250158
TU285328 lncRNA upstream 157146 35046146 ~ 35046501 (+) True G250150
TU285181 lncRNA upstream 220724 34968858 ~ 34982923 (+) True G250029
TU285600 lncRNA downstream 39336 35261210 ~ 35261419 (+) True G250398
TU285603 lncRNA downstream 42534 35264408 ~ 35264638 (+) True G250401
TU285606 lncRNA downstream 44260 35266134 ~ 35266436 (+) True G250404
TU285607 lncRNA downstream 45790 35267664 ~ 35267944 (+) True G250405
TU285610 lncRNA downstream 50019 35271893 ~ 35272185 (+) True G250408
XM_021596601.2 mRNA upstream 33383 35153546 ~ 35170264 (+) False rab42b
XM_021596594.2 mRNA upstream 50645 35119706 ~ 35153002 (+) True ctps1b
XM_036973932.1 mRNA upstream 165278 34991062 ~ 35038369 (+) False LOC110519409
XM_036973945.1 mRNA downstream 36221 35258095 ~ 35611096 (+) False ptprub
XM_036973946.1 mRNA downstream 36221 35258095 ~ 35611096 (+) False ptprub
XM_036973950.1 mRNA downstream 36221 35258095 ~ 35611096 (+) False ptprub
XM_036973953.1 mRNA downstream 36221 35258095 ~ 35611096 (+) False ptprub
XM_036973954.1 mRNA downstream 36221 35258095 ~ 35611096 (+) False ptprub
TU285376 other upstream 30184 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 783035 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 900740 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 1190590 34006158 ~ 34013057 (+) True G248795
TU283831 other upstream 1225812 33974476 ~ 33977835 (+) True G248794
TU287065 other downstream 1289700 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 1401736 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 2505074 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 2870448 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 3219292 38441166 ~ 38441734 (+) True G254204

Expression Profile