RNA id: XM_036973954.1


Basic Information

Item Value
RNA id XM_036973954.1
length 4772
RNA type mRNA
GC content 0.57
exon number 30
gene id ptprub
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 35258095 ~ 35611096 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aGTGTGCttggggggaagagagaaaatgTTTTGTACTGTTTATCCTGACGTCAGTTAGTACGGCTTGCACTACTGCCGTTGTCTCGCACCCACGTTTCAGCAAGAATTCGGGAATCGATAGGCTGGAGTCCACAACTTGCAGATCGGTCCTCGAGGAGTCACTGAAATGATTTCTGCAGCTATCCCAAACTGGACTAAAACAGCACAATGAACACCTGCGCTTTTCTGCTGCTCCTGGCCGTTCAAATCTACGCCGAAGGCATAGAGGGACCAACAGcaGCAGGCTGCACCTTTGACGAGGATTCTGAGCCCAGTCTGTGTGACTTCACCCAAGGCGAGGAGGATGACTTTGACTGGCAGCTCTACCGGACACACAACTCGCCCTACGCCTCTTCTGACCTCCTGCGTGGTTCCTATATGCTGGTGAACTCTTCCCAGCATGCTGCAGGGCATCGTGCCCAGCTCCTGCTGCAGACGCTGAGTGAAAACGACACACACTGCGTCCAGTTCAGCTACTTCCTGTACAGCCGCGATGGCCACAGTCCTGGGGCACTGCGGGCGTACGTTCGGGTCAACGGCGGCCCGCTGGGTAGCCCAGTATGGAACACGTCGGGGTCCCACGGACGACAGTGGCACCAAGTGGAGCTGGCTGTCAGCACCTTCTGGCCCAATGAGTACCAGGTCCTGATCGAAGCAACTGTTTCCAGGGAGCGGCGAGGCTACATCGCCATGGATGACATCATGCTCCTGACCTATCCCTGTTATAAGGCGCCCCACTTCTCCCGGCTGGGAGATGAGGAAGTCAACGCTGGGCAGAATGCAACCTTCCAGTGTGTGGCATCGGGCCGGGCATCGGAAGCTGAGAAGTTCCTACTGGAGaGGCACAGTGGGGACGTGATAGCTACAGCCTTGGTCAAGCACCTGAGTCACCGGCGCTTTGTGGCATCATTCCAGGTGGACAGTGTGCAGCGCAACGACCAGGACTTGTACCGATGTGTCACCCAGTCCTCCAGGGGCTCTGGGGTCTCCAACTTCGCTGAGCTCATCGTCAAAGTTCCCCCCTCCCCTATTGCGCCCCCGCAGCTGCTGCGAGCGGGCTCCACATATCTGATCATCCAGCTCAACACCAACTCCATCCTGGGAGATGGCCCTATCATCAGGAAGGAGATTGAGTACCGGGCCAGCCAATCACCTTGGTCCGAGGTCCATGGGGTCAACATGGTCACCTACAAGCTGTGGCACCTGGACCCAGACACGGAGTATCACATAAGTGTGTTGCTGACCCGGCCCGGAGAGGGCGGCACCGGACCACCCGGACCACCCCTCATCAGCAGGACTAAGTGTGCAGAACCAACACGGGCATTGCGAGGTCTCACAGCCTCAGAGATCCAGTCCAGGCAGCTGACCCTGCAGTGGGAGACGCTGGCCTACAACTTGACCCGCTGCCACACCTACTCTGTGTCCCTGTGCTACCGCTATGCCACCGCAGGGGGCGGTGGCGGGCACAACACTACTGTGCGCGAGTGCCTGGCGGTGGAGCACAATGCCTCACGCTTCACCCTGCGCGACCTGCCGGCCTACCATTCCATCCGGGTCCGTCTGGCGCTCGCCAACCCTGAGGGCAAGAAGGAGGGTCGGGAGGTCACCTTTCAGACTGAAGAGGACATACCCGGTGGCATCGCCCCTGAATCGCTGACATTCACCCCCCTGGAGGACATGATTTTCCTCAAGTGGGAGGAGCCAGTGGAACCCAATGGTCTCATCACCCAATACGAGatcAGCTATCAGAGCATTGAGTCGTCTGACCCGGGCATCAACGTGCCAGGACCTAGGAGAACAGTATCGAAGTTGAGGAACGAGACCTATCACATGTTCTCCAACCTTCACCCTGGCACCACATATCTGATTTCTGTCCGCGCCCGCACAACCAAGGGCTTCGGCCAGACCGCCCTAACTGAGATCACCACCAACATTTCAGCTCCTATGTTTGACTATGGAGACATGCCGTCCCCTCTCAGTGAAACAGAGCGCACGATCACTGTGTTGCTTCGCCCCGCCCTGGGCAGGGGAGCACCCGTCAGTACGTACCAGGttgtggtagaggaggagagtggcAGGAAGGTGAAGAGGGAACTGGGGGTTCAGGACTGTTACCCTCTGCCCATGTCCCATGGGGAGGCCCAAGCCAGAGGGACCCCTCACTACTACACGGCCGAGCTGCCTCCCAGCAGCCTGCTTGAAGCCAGCCCCTTCACAGTGGGGGACAACCACACCTACAACGGTTACTGGAACACCCCGCTGGACCCCCGCAAGAGCTACCTCGTCTACTTCCAGGCCATGAGCAACTTCAGAGGGGAAACGAGAATAAACTGCATCCGAATAGCCCGGAAAGCGGCCTGTAAGGACCACCGACGGGCTCTGGAAGTGTCCCAACACTCAGAGGAGATGGGGCTGATCCTGGGGGTGTGTGCTGGGGGCCTGGTGGTGCTCATCCTGCTCCTGGGGGCTATCATTATTGTCATCAGAAAGGGGAAGCCAGTGAACATAAATAAGACACCCATAACGTACCGTCAGGAGAAGAGTCACATGGGTTCGATGGAGCGCAGTTTCACTGACCAGAGTACTCTGCAGGAGGATGAGCGCATGGCCCTCTCTGCAGCACGCATGGCACACACCTGCAGCACGCGCAGTGAGCAGCGTAGCTCAGTGAACGAGTCCAGTAGTCTTCTGGGGGGTTCGCCGCGACGCCAGTGTGGGCGTAAGGGCTCACCCTACCACACTGGTCAGCTCCACCCTGCTGTGCGCGTGGCCGACCTTCTCCAACACATCAACCAGATGAAAACTGCAGAGGGCTACGGCTTCAAACAGGAGTATGAGAGCTTCTTTGATGGCTGGGACTGCACCAAAAAGAAGGACAAAACTAAAGGGAGGCATGACACGTTGATGGGATGTAAGTCATCATGGACATGCCAGCCCTCTTGTGACGAAAGCACTGATCACCATGACCGCCACAGGGTCAAGCTCCACCCACTCCTGGGAGACCCCAACTCTGACTACATCAACGCCAACTACATAGACATTCGGATTAACAGGGAAGGCTACCATCGATCCAACCACTTCATAGCCACTCAGGGGCCCAAACAGGAGACAGTGTATGACTTCTGGAGGATGGTGTGGCAGGAGAACTGCTTCAGCATCGTCATGATCACTAAACTGGTAGAGGTAGGCAGGGTGAAATGCTGTAAATACTGGCCTGATGACAGTGAGATGTATGGAGACATCAAGATTACACTGCTGAAGACGGAAACACTTTCAGAGTACACCGTTCGTACTTTTGCCATGGAGAGGAGGGGCTACTCAGCTAAACACGAGGTGCGTCAGTTCCACTTCACGTCCTGGCCGGAGCATGGGGTTCCCTACCACGCCACAGGCCTGCTGGCCTTCATACGGCGGGTCAAAGCATCCACTCCCCCTGATGCCGGACCCGTGGTCGTCCACTGCAGTGTGGGGGCGGGCCGCACAGGCTGCTACATCGTGCTGGACGTCATGCTGGACATGGCCGAGTGTGAGGGCGTGGTGGACATCTACAACTGTGTCAAAACCCTGTGCTCACGACGCATTAACATGATCCAGACAGAGGAGCAGTACATATTCATCCATGATGCCATCCTGGAGGCTTGTCTGTGTGGAGAGACGGCCATTTTGGTGAATGAGTTTGCCCTCACCTACAAAGACATGCTGCGGGTGGACTCTCAGAGCAACTCCTCCCAGCTACGAGAAGAGTTCCAGaCGTTGAACTCGGTCACCCCTCACCTGGACGTGGAGGAGTGCAGCATCGCCCTGCTCCCCAGGAACCGGGAGAAGAACCGCAGCATGGACGTGCTGCCGCCTGACCGTGCCCTGGCATTCCTGGTCACCACTGAGGGCGAGAGCAACAACTACATCAACGCGGCACTCACTGACAGCTTCCACCAGCCCGCCGCCTTCATCGTCACCCCTCACCCGCTCCCCGGCACCACCGCCGACTTCTGGAGGTTGGTGTTCGACTACGGCTGCACCTCGGTGGTCATGCTCAACCAGCTCAACCAGTCCAACTCTGCCTGGccctgtgTCCAGTACTGGCCAGAGCCTGGTCTACAGCAGTATGGGCCAATGGAGGTTGAATTCCTGTCCACGTCAGCTGACGACGATGTCATCACTCGTCTGTTCCGTGTCAAAAACGTGACAAGACTCCAGGAGGGCCAGCTGGTGGTGTGTCAGTTCCAGTTCCTGCGCTGGTCAGCCTACCGCGACGTGCCCGACTCCAAGAAGGCCTTCCTCAGCCTGCTGGCTCATGTGCACAAGTGGcagagggagtgtggagatggCCGCACCGTTGTCCACTGCCTGAGCGGCGGTGGGCGCAGTGGGACATTCTGTGCCAGCACCATCCTGCTGGAGATGATCCAGTACCAGAACATGGTGGACATCTTCTACTCCGTCAAGACGCTCCGCAACTCCAAACCCAACATGGTGGAGTCACTGGACCAGTACCGATTCTGCTACGACCTTATCCTGGAGTACTTGGACTGCATAGAAGATAGCATGAGATAGCAATGTTCCGTAGCTGGTGCATCTCGTGGGCTGTGACCGCTGACTGGGTTACATACCCTGTGACCCCCTCAACATTTACTTTATTGTTTGGATTAATGGGCCTAAACTGTTGTGAAGGacaacaatagaaaaaaataaaaaaaggggtAAGTGCTCCTCACTTTTAACCCTTAAATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU285338 lncRNA upstream 197613 35060255 ~ 35060482 (+) True G250160
TU285337 lncRNA upstream 198080 35059799 ~ 35060015 (+) True G250159
TU285336 lncRNA upstream 198355 35059526 ~ 35059740 (+) True G250158
TU285328 lncRNA upstream 211594 35046146 ~ 35046501 (+) True G250150
TU285181 lncRNA upstream 275172 34968858 ~ 34982923 (+) True G250029
TU286179 lncRNA downstream 60360 35671456 ~ 35672059 (+) True G250965
TU286189 lncRNA downstream 66896 35677992 ~ 35678191 (+) True G250972
TU286190 lncRNA downstream 67451 35678547 ~ 35678818 (+) True G250973
TU286195 lncRNA downstream 70044 35681140 ~ 35681368 (+) True G250978
TU286196 lncRNA downstream 70553 35681649 ~ 35681951 (+) True G250979
XM_036973943.1 mRNA upstream 36221 35203647 ~ 35221874 (+) False LOC110519579
XM_036973944.1 mRNA upstream 36221 35203675 ~ 35221874 (+) False LOC110519579
XM_021596601.2 mRNA upstream 87831 35153546 ~ 35170264 (+) False rab42b
XM_021596594.2 mRNA upstream 105093 35119706 ~ 35153002 (+) True ctps1b
XM_036973938.1 mRNA upstream 219726 34993364 ~ 35038369 (+) True LOC110519409
XM_021596667.2 mRNA downstream 514231 36125327 ~ 36144587 (+) False serinc2l
XM_021596669.2 mRNA downstream 514231 36125327 ~ 36144587 (+) False serinc2l
XM_036973960.1 mRNA downstream 514231 36125327 ~ 36144587 (+) True serinc2l
XM_021596673.2 mRNA downstream 561097 36172193 ~ 36261967 (+) False LOC110519702
XM_021596688.2 mRNA downstream 561097 36172193 ~ 36261967 (+) False LOC110519702
TU285526 other upstream 36723 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 84632 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 837483 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 955188 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 1245038 34006158 ~ 34013057 (+) True G248795
TU287065 other downstream 900478 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 1012514 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 2115852 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 2481226 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 2830070 38441166 ~ 38441734 (+) True G254204

Expression Profile