RNA id: XM_036973959.1



Basic Information


Item Value
RNA id XM_036973959.1
length 1104
RNA type mRNA
GC content 0.44
exon number 5
gene id stmn1b
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36112187 ~ 36117544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccagctacGCAGCGCATGACTCTGGGGATGGAGACTAGGTGGGAGTGATCACACTGTGCCTCGGTCTTGCGCTTTTTCTCAATTCCTATGTCGACGATTAAACATTGACTTTCGACAACCACTATGGACAAATCGCTGTGCTTTAACTTACATGTGAAGAGGGGTTTCAGtctgcagtagctagctagctaatatattCAGGTTGTCTGCCAGTGTCTGTGCCGAGTGTGCTGAGCTGACAGTGTAGCCGAGTCCATTGTCTCCTCAGCACCAGTTTGCTATTCGTGCAATTTTCAGGCAAAGCAACCCTCAGTACTCTGCTGAAATGGCGTCCTCTGGAGCGATCCTGGTCAAGGAGTTGGACAAGCGTGCTTCAGGTCAAGCATTTGAGGTAATCTTGGCCCCCGATGCCAAGGGTGAAATCCCCCTACCTCCCccaaaggagaagaaggagatgTCACTAGAGGAAATCCAGAAGAAACTGGAGGCTGCAGAGGAGAGACGCAAGAGTCATGAAGCAGAGGTGCTGAAGCACTTAGCTGAGAAGAGAGAGCACGAGAAGGAAGTTCTGAAGAAAGCCATGGAAGAGAACAACAACTTCAGTAAGACAGCAGAGGAGAAGCTCAATCAGAAGATGGAAGCCAACAAAGAGAATCGCACGGCACGAATGGCAGCTCTCAATGAGAAATTCAAAGAGAAGGATAAGAAGCTTGAGGAGGTACGAAAGGCCAAGGAAACAAAACCAGAGGGGGAGAACTGATTTTCttttgtaataataataaaaaaacatatcTTTTTGTTCTGTTCATTGACAGTATTATATTTTTCATTGTTATAGTTTTGTTCACCTTGTTAGGATTAGTTAGGCCGTCCATTGTTGCTTTTGTTGTGGATGTGTAAGTATTTCTTCCCCCACCTCCAGTAGATGTGTTATTTGTAGCTTATGACCTTTGAAATAAGCAGTGTTTTTACCTATAAGGAAGCATGCCACTGTTAGACATCGGTCCTTAACATTGTGAATTGCATAATGTAAGTAAATCCTTGTACCTTGTAAAACTGCGTTATCTGAGCTTAATAAAGTTGCAATTGTTCTTCAAAACCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU286747 lncRNA downstream 2993 36105728 ~ 36109194 (-) True LOC110519653
TU286638 lncRNA downstream 108180 35943286 ~ 36004007 (-) True G251384
TU286306 lncRNA downstream 225976 35885990 ~ 35886211 (-) True G251075
TU286305 lncRNA downstream 227102 35884397 ~ 35885085 (-) True G251074
TU286304 lncRNA downstream 229087 35882721 ~ 35883100 (-) True G251073
TU286756 lncRNA upstream 2755 36119675 ~ 36119874 (-) True G251498
TU286757 lncRNA upstream 5560 36122480 ~ 36122800 (-) True G251499
TU286758 lncRNA upstream 6319 36123239 ~ 36123626 (-) True G251500
TU286759 lncRNA upstream 6768 36123688 ~ 36123908 (-) True G251501
TU286760 lncRNA upstream 7467 36124387 ~ 36124675 (-) True G251502
XM_021596651.2 mRNA downstream 2998 36102843 ~ 36109189 (-) False LOC110519653
XM_021596617.1 mRNA downstream 909244 35176253 ~ 35202943 (-) False si:dkey-34d22.1
LOC110519907 mRNA upstream 319461 36436381 ~ 36437754 (-) True LOC110519907
XM_036964824.1 mRNA upstream 369955 36486875 ~ 36505339 (-) True LOC110504056
XM_021596781.2 mRNA upstream 427250 36544170 ~ 36568553 (-) True tent5ba
XM_021596793.2 mRNA upstream 494895 36611815 ~ 36628902 (-) False zdhhc18a
XM_021596801.2 mRNA upstream 494895 36611815 ~ 36628903 (-) False zdhhc18a
TU285142 other downstream 1215891 34895958 ~ 34896296 (-) True G249990
TU285130 other downstream 1222233 34889506 ~ 34889954 (-) True G249978
TU284611 other downstream 1752736 34357275 ~ 34359451 (-) True G249485
TU283202 other downstream 2692480 33419429 ~ 33419707 (-) True G248239
TU280776 other downstream 4530985 31562545 ~ 31581202 (-) False LOC110518371
TU286719 other upstream 23192 36140112 ~ 36144572 (-) True G251462
TU286962 other upstream 240563 36357483 ~ 36357971 (-) True G251681
TU287636 other upstream 614925 36731845 ~ 36733440 (-) True gpatch3
TU291417 other upstream 3282341 39399261 ~ 39508702 (-) True LOC110519955
TU291595 other upstream 3527651 39644571 ~ 39645743 (-) True G255911

Expression Profile