RNA id: XM_021596673.2


Basic Information

Item Value
RNA id XM_021596673.2
length 7812
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC110519702
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 36172193 ~ 36262289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGCCAATGGGAGACGAGGAAAGGGGGCGGAATCGTTTTGACGTCTCGTGCGGCGGCGGCGCTGAGTGTTTGTGTAGCGCGAGATTGTGTTTTTGTTGTTCTAATCAGCTGAATGTGGTTTCGTAGTTCCAGTTTGACAAGGCGTAgggaaagcccccccccccagtttgtTTAGTGCAAGATCTGCACTGCACACACCGCTAAGGAAATGCGGACTTCTGGCCCTTTCGCTACGGGTTACATTGCTACAGTACCCACACCGTAGCAAGCTGATCCAGTGAGGTACTAGGTTTGACCAGAGACGGCCTAAGAGGAACAAGAGAAGACCCAGAGGTTTCTACTCACCAGAGCCACAGGTGTCAGAACTGTCCAGCAGTATGCCAAGCCAGACCCTCATCTAGCTCCCAATCCACAGTGAAGACCTATCAAAATGGCTCAGACTTACTCTGTGATGAGAGCGAATCTATGTTTACCTACATCCTCTATGCTGCTCTGGGGCACTTTTTAATTATGTCTTATTTGGTCCTCTTGAAAGACTTTTGGCCTGCTCATAAAAAAGGTACTCCGTTAGATGTTCCCTCGTCCCAGGCATCCCTGCGGCACTGTGGCTAGCCCCATGAGGCTGTGTGGTGCACTGCTCCCTGAGGCAATCCCTGTGTGTCTGTAAGGCCTCCTCCCCACTCTATGGAGGCGGAGCCCAGCCACCCTGCTGATGGGGAGCGATCCGGAAGGCAACAGCAGCCTCTTTCTCCTGGGGCCACTGAGCCCCCCACAGGGTCCCGTCCAACTCAGCCACAGCAACCGTCATCCAACCCCCGCCCCGTCCACGGTGGCCTGGGATGTCTCCACCACCGCAAGCCTAAACGTAGCGACCTGCTTCTCAGGCTTCAGCATCAGCACAAGACCCAAGCAGCATGTCAGCTCTCAACAGACACCCCAGGTCCTTCAGGAGGTagcttctcctccccctccaccttaTCCCTACAATCCTCCTCTACCCAAGGCCACAACACTCAGGGGGTGCAGTCCCAGCCCAACCAGGAAGTCCTAGAGGGCAGCCCATCTAAAAGAGGCGAGAGGAAGCTCCAGAAACCGGGGAAGTACGTGTGCACTTACTGCGGCCGTCCATGTGCCAAACCCAGCGTTCTCCAGAAACACATCCGCTCTCACACAGGGGAGAGGCCTTATCCTTGCGTCCCCTGTGGCTTCTCCTTCAAGACCAAGAGTAACCTGTACAAGCACCGCAAGTCCCACGCCCACCGCATCAAGGCAGGCCTGGCATCCAGCCGGGACGAGCTGAGCCTGAGCGGACCCGAGATGAGCGCCCTGGGAGAGGATCCCGAGGAGCCCACGGAGGGGGAGAGCACAGACTCTGAGGAGGAGACGGGTCAGTACAGGAAGGAGAGGCTGAGCAAGCAGAAGAGCAGCAGCAGTTTGGCGCTGTCAGGGCAAGAGGAGGGCCAAAGGCCTGACGACTCCCAGGCCGTGAAGCAGAGACTGGCCATGAGGCTGAGCGAGAGGAAGCGTGGCCCCATGGCCTCCCCGGACgaccctccctccacctcctcctcactgGGCCCCAGCAGTAAAGGCAGCCAAGAGTCAGGCTACTTCTCCCTTTCGAGGAGCTCTGAGATGAGCCGAGCTGACTCCCAGGTAAGCCCTCCCAATGCCAAAACCTATGCCGAGATCATCCTGGGCAAGTATGGGCGGCTTGGAGGGCAGCAGCGCGGTCCCCATCAGCAGCGCGCCCACTCTTCTTCATcggggatggaggagaagagcAGCATGCCCTTCAGCATGCCCAAGACGCAGGTCATCGAGCACATCACCAAACTCATCACCATCAACAAGGCGGTTGTGGACACCAGCGAGATCGACAGCGTCAAGCCCAGGCGCTCCTCGCTCTCCAGGAAGAGTAGTCTGGAGTCACCCAAGTTCTTCTCCCCCAAAGACCCCTATGTGTTTGAGCCTAAGGGAGAAAGCCCAGGTCCCAGTATGACAGGCCAATCATTCCATCCCCATATCCAAGACGTGGGCCCATCGGGGGTCCAGAAGTCCTCCTCCTCATTGCCTCTGCTGAGAAGCCACTCCATGCCCACCTCAGCAGGCCAGGAAAACCACTCCACCACCTCTCCCTGGGGGTTCTCTGGTCAGAGCCACTCCTTTGATGAGCAGCAGGCCGTGGTGGCCAAGATGAGGGTGGGCGGGCAGTACCGTTTGCTGAGGCGCCAGCCCGCCATCGAGTTGCCCCTCGGCACTGAGCTAAGCCTGGAGGAGGCTGGCCCCTCCTCCTCCGCAGCTACAGAAATTGGCCTAACCAGGAAGCAGCAACGCAAAGGTCCAAGGCTGTATGAGTGCGAGACCTGCGGCATCCGCTGTAAACAAAGGGAAAGTTACGAGGCCCACAGGGGTTTCTGCACAGGCAAGCCAATAaaggagctggagagaggagaggtggatggggCGTTCCGGGATGACCGCCCCCAGATGATGCACTATAAATTCCGGGCACTGGCCATggcagtgaggaagaggaggaaagcgGATAGTCTGGAGGAGGATCCTCCCAGCCCCAGGCCTACAGCTGTTGTGACCTGCAGCCCCGCAACCACCACTGCAGTGCCAAATCGGGTGCAGCAGAGTGAGGCCTTCTCAGGTGCTCCCTCACAGGCTGAGCAGCAGCAGCAAGATAGGAAGGGCATCTCGGTCATCCAGCACACCAGCTCCTTCGAGAAGCAGAAAAGTATATCCATGGAGAGCCAGGAGTCTATAGAGCTCAGAGAGAGCCAGTTAACACCGCAAAAACAGCCGCAGCCAAAATCATCTCCCTCCATGTCCCGCCTGGTCCGCCAGCACAACATCCAAGTGCCAGAGATCCTAGTGACGGTGGAGCCTGACGCTGATATGGTGTCAGTGTCGCCCATGGCGGCGGCATCCTCGTCCAAGGAGccagagagagtggtagaggagtTCCAGTGGCCTCAGCGCAGCCAGAGTATGGCTCAGCTCCCCGCCGAGAAGCTGCCACCAAAGAAGAAGCGTCTCCGTCTAGCCGAGGCTGCTGCCCAGTCTTCTAGAGAGTCCAGCTTTGAGTCGGTATCGCTGGGGACCCAGAGCCCCAGCCAGGAGAGCAGCATTTCCCATTCACCCAGCCGCTCTGCCTTCTTTGAAGACATGGGGGGAAAACCTGCTGAGCCTTCCCCCTGGGGCTCCAGCAGCACCCAGGGCTCCCACATGCTAACAGTGCCCTCGGGCCCCCACCAACAATACCAACCCCAAAGAGAGATGCGGCGCTCAGCCTCGGAGCAGGCCCCGGTCAGCCCCCAGCACACGGATGAGATCGTGGAGACCAGGAGCAAATCCTTTGACTACGGTTCCCTATCCCCGCAGGAGTCTGCTTCAgcctggagggagaggaggaagtgcCTACTGGTAAAGCACACCACCCTCGGTGAGCCAGACCACGAGGAAGGGGCCGTGGCTAGCCACTCAGGCCGACCAGGGAGCACCAAGCCGGACCCGTCCTACACCAGCCACCCTTCCTTCCACCCAGCTGAAGCCAGCACCTCGAAGCTCAGCCTGGGGGCCATAGGGAAGACCGTACAGCTGTTCCACCAGCCCCGGATACTCCCATTCCCCATGCGACCAACTGGGCATGATCGGTTCCCTCTTGGCCAGTTAGCCCAGCTCCATCCGGTCACCACTGCCATCTCAGATGTCCTCTCCACCCACATCATCCACAGAGCCTTcttacacacacacccttcccctCCAACCATACAAGTTCACCCAGGGCAGCTTCACATGGCAGAACGCCTAGGCCTGCCCCTCCATCCTATTTCAGCTCTGCTTTCCCTGCAGTACCCCACTGGGGCTGGCCAGGCTGTGTACCTCCCTGTTTCTCCTGGGCTCACCATCCAAGTCCCCACACAGCCCCCCATGCCCTCCACCGTGGTTCTCCCTACCCCAGCTCCTCAGTCCTTAGTCCCTCTGCCCTGCCGCCATCCCCCGCTTGTCATCGCAACGTGCCTGGCACAGCTGACGCCAGTCGTGTCACTGATGGTGCCAGTGCGCCTCCAGACCAACATGATCACCTACGCCAGTGCCCTGTACACCACCCTCTCCCAGATCCTGGCGTCAGCCCGCTCCCAGGAGCCCATCTGCTGCATGGCCATGGTCATCATGGGCCAGCTGGAGCAGGAAAAGCTGCAGAGGTCCTACCTGAAGATCCCCACCCCGGACTTCAAGAGCTACCTGCCCCTGTCTCTACCCCTGGAGCTGGGCTCTGTGTCCGGAGAGGGCTATGAGCCACTGGGGGCTGGAGGGAGCAAACGCATGCTCTCTCCTGCAGCCAGTCTGGAGCTCAGCACAGAGGCCCAGCGCCAGCAGAAACgagtgaaggaggaagaggaggagggagagaaggtgggagaggaagaggaaaataCGGGTTCTGGGAGAAAACTGGAAATCAGGGAAGACAAAAAGAAAGAGCCGGAAAGGGCCCAGATAGGAGTAGTAACTGTGAAagtcgaggaggaagagaatGTACGGGACACAGAAGGGcacagggaagagagggagatgcaaGGGAAGGCTGGACCTAAGAAAGAAAAGGGGAATGAGGGCCAGGGAGTGAGTGCGTCCTTTGTACCCCAGAGTCCTGAGCGAGTCAAAGCCCCCTTGTATCCCAGCCTCCACACCACCACCTCAGTCAGCTGGTGCTACTTGAACTACGCGAAGCCCAACCCTTCTGCCCAGAGGGAGCCACAAACCTCCGTTTACACCTCCTGGAGCATCAGCGTGCACAACCCCAACCTGCCAGGCCTGTCCACCAAGCTGGCCCTGTCCCTGCTGCACTCTAAGCAGAAACACAGCTTAGAGACCTACACCATGGCCACAGCTCTAACCCCGGCGACAGGCAAGGTGGTCCCTGCCAGCAGTAGAAAGCCCCACATTTCAGAGGTACATGCTACCCCACCCAGCACCCCTGTCGAAGTGAAGGAGCCACCACAGCAGcctgagaaggaggagaagaaggagaagagagaggtgcaagggccctccacctccaaacaGAGCGAACCTCTCCGTGTCCAAATCTTCGAGGGCGGATACAAGTCTAATGAGGAGTATGTGTATGTGCGGGGTCGTGGCCGAGGAAAGTATGTGTGCGGAGAGTGCGGGATCCGCTGTAAGAAGCCCAGCATGCTAAGGAAGCACATTCGAACACACACAGACGTCCGGCCCTACGTCTGCAAACACTGCAACTTTGCCTTCAAAACCaaagGGAACCTTACCAAGCACATGAAGTCCAAGGCTCATGGGAAGAAGTGCCAGTCAATGGGAACGTCTGGGTCTTCACTGGACGAGCCGGAGACCGAGGAAGCAGGAGATATTGAAGAGCATTTATCTGGCTCCGAGGACCAGGATGAGCACCAGTTCTCTGACGTGGATGATTCAGAGGAGGACGATGAcgaggatgatgaagaggagtACTCATCTCACAACGAGCCGTCCTCCTCACCCGACCGCCGTCTGTCCACATGGGGGCACTCCAGCAGCGGAAGACGGTCCCAGCAGGGCACGCCTGACCCCTCAGCCCCAGAACCCCAGCCAGATCCCTGCCTCAGCCAGGAGCCCTCTCCCACCCATAGACTGTGGCCCAGCGGGCGTGCTTCCTCTCCAGAAAGCCGGAGGGCACTGTTCTGGGACGCCTCCCCCAGGGCCTTCTCCCCTAGCAGTGAGAGCTGCTCTCCCATCCGAAGCCTTTCCCCCAGACTGGAGCTGGCCTCCCCCAACCGACACCTCTCGCCCTCTTCCAAGAGAGAACCATCCCCCATCAGAGCTCTATCCCCCATCAGAGCTCTATCCCCCCTGTACCCCCTGCGGCCTCTGTCCCCTAGCCAGTATCGGGTGTTGTGGGCCCGGGCCTCTCCCTCGTCCCTGGGGGTGCAACATAGACCTCGCAGGTCTCCCAGTCGTTTGCCATGGGACATCCCCAGTATGATGGCCAGCGATCGCAGACAGGTGGGTTCAATGGAGAGGATAGGAACACCAAGTAAAGGGCAGATTGGTCCAGAGCCCTGCCTGTCATTCCCCCCAGCTTTCCGTCTTTCCCCCACTGACAGCCCTAAAGCCCAGTCCCAGTCCAATGACCGCATCTTCAGCCACCTGCCTCTGCACTCCCAGCAGGCCAGGGTGCCCTACCTGATGATCCCCATTGGGGGCATTCAGATGGTGCAGGCTCGTCCCCGTTCCCACCCCACTGCCCCCACCTCGACCTCCTCTCCCCCAATGGAGGGGCTTTTACTGGGCCAGACCAGGAGGGAAACCCCCTGGTGCAGGACCCCCATAACTCAAGGGCTCAGAACTCCTGGGGACCACTGGTCTGACAGCCAGGAAGTAGTAGGAGCCAGCCAATCAGGGCTATGCATTCCCAGTATAACCCCACCCATATGTTCCAAACCCTCCACCTCGCACCAGGGTAGGATGGACCCAGGGATGATAAACACAATGCAAAAGGACAGCTTACACAGCTCCTCCCACTCACACAGGTCTGAGGGAGAGACCAGAAAACGACGGCCCTCACACAGCCAGGCAGGACCATCCCCCTAGTCAGCCAGTCCCCCCTCCCACACACGGGATTGGATAGCTGTCTGAGAGGCAGGAGCCACCAGGGTTGTGGTCCAGAACGACTGGTTCAGAATTGGTAGAGGAAGAAGCTAAGGTGGAGACTCAACCAATCAAGGCCAGAGCACTTTGATACGTCATGCATCCTTTACGCTTTTTGTTGCAACTCTTGTTTTTGGGTTTTGTATTGCTTTGTTTTTACACAGTTTTCAATTCAATTGTTAACTTAAATGTTAGTTCTTCTGCAATATTCAGGTTTGTTATAAAATGCACTTTTTCATTTTTGGCGATTTCTTTAAATCTCTTGATCTTAGCAGTATcaatagagatacaggtatcttaatatatatttaaatatatatgtcAAATAAATATGAATACATTTGTAAATGACCAAAATCGTTAATGAACAATAAATTCACATTTATTTGTTTTGTCTCTTTGTCCACTATTACCCAAACTGTAGTTACTTGTGCCTTTTCTTTCTGTGTTTGTCTTGAGATGACGACAAAGAAAAAAGGCTGTGAAGTTTTGATTTACACTCTGTGTTTCCAGGAAGGGGGTTCCTGTGTGGCGTGATGATTGATTGTTTGTatccttaaagggatagtttggggTTAGAAGTAGtttcgtgagccaatgctaactagctgtACCCGAAGACTTCCAGTCTTTGCACtaagctagttagcattggctcacaaaactacAGCACCTCtaccttccttcatactggatgcagagacataatAATTAATTGCCAAAACaccaaactatccctttaaggccATTGCATTGATGTCAGGGTATTCTAAAATATGGAATATGAGGTGGTATATTGAAGGAACAGTGAGCGCTTTGCAAAGAAAATGCACTGAAgtcatattttttataaaaagaTAGTCAATGTTATGTCTCTGTACAGAGAAGAGTGCTCCATATTTATTATTTTGTTAAACTATGTAAGTTATTCTTTAAGTTTTTTTACTTGAcatttttggaggaaaaaaacATGCCATTTTTATTTAGTCATGTGTCTGTCTTTTTCATAATGTTCTCAAAAGACTTGAGATGGAGAGGAAGTTCTCTTTTAAGATTGGATATGGAACAAGTGCCCAAAATATTTTCACAcaggacatttttttttctctgaaCCAATAAAAATTGCACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286484 lncRNA upstream 3901 36168033 ~ 36168292 (+) True G251240
TU286482 lncRNA upstream 5247 36166650 ~ 36166946 (+) True G251238
TU286475 lncRNA upstream 12906 36158884 ~ 36159287 (+) True G251231
TU286476 lncRNA upstream 13524 36158048 ~ 36158669 (+) True G251232
TU286454 lncRNA upstream 49386 36122563 ~ 36122807 (+) True G251211
TU286570 lncRNA downstream 54419 36316386 ~ 36316620 (+) True G251323
TU286507 lncRNA downstream 55393 36317360 ~ 36318196 (+) True phactr4b
TU286572 lncRNA downstream 63768 36325735 ~ 36326020 (+) True G251325
TU286576 lncRNA downstream 67754 36329721 ~ 36330039 (+) True G251329
TU286581 lncRNA downstream 73403 36335370 ~ 36335580 (+) True G251334
XM_021596667.2 mRNA upstream 27606 36125327 ~ 36144587 (+) False serinc2l
XM_021596669.2 mRNA upstream 27606 36125327 ~ 36144587 (+) False serinc2l
XM_036973960.1 mRNA upstream 27606 36125327 ~ 36144587 (+) True serinc2l
XM_036973953.1 mRNA upstream 561097 35258095 ~ 35611096 (+) False ptprub
XM_021596703.2 mRNA downstream 31857 36293824 ~ 36301569 (+) True LOC110519762
XM_036973968.1 mRNA downstream 55346 36317313 ~ 36368316 (+) False phactr4b
XM_036973969.1 mRNA downstream 55346 36317313 ~ 36368316 (+) False phactr4b
XM_036973970.1 mRNA downstream 55346 36317313 ~ 36368316 (+) False phactr4b
XM_036973971.1 mRNA downstream 55346 36317313 ~ 36368316 (+) False phactr4b
TU285526 other upstream 950821 35219832 ~ 35221372 (+) True LOC110519579
TU285376 other upstream 998730 35153702 ~ 35173463 (+) True rab42b
TU284433 other upstream 1751581 34419890 ~ 34420612 (+) True G249323
TU284354 other upstream 1869286 34302572 ~ 34302907 (+) True G249245
TU283840 other upstream 2159136 34006158 ~ 34013057 (+) True G248795
TU287065 other downstream 249607 36511574 ~ 36525173 (+) True G251773
TU287145 other downstream 361643 36623610 ~ 36627542 (+) True G251845
TU288722 other downstream 1464981 37726948 ~ 37727338 (+) True G253299
TU289268 other downstream 1830355 38092322 ~ 38092734 (+) True G253834
TU289648 other downstream 2179199 38441166 ~ 38441734 (+) True G254204

Expression Profile